Wall clock time and date at job start Mon Mar 30 2020 02:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 110.56816 * 2 1 4 4 C 1.54486 * 110.51000 * 237.32284 * 2 1 3 5 5 O 1.44423 * 104.80574 * 265.33632 * 4 2 1 6 6 C 1.44423 * 105.27493 * 319.48535 * 5 4 2 7 7 C 1.54480 * 104.80156 * 40.51257 * 6 5 4 8 8 H 1.08995 * 110.62969 * 94.72603 * 7 6 5 9 9 O 1.42901 * 110.51191 * 217.37726 * 7 6 5 10 10 C 1.42905 * 114.00134 * 264.64318 * 9 7 6 11 11 C 1.50703 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.07998 * 119.99574 * 359.97438 * 11 10 9 13 13 C 1.37874 * 119.99789 * 179.97438 * 11 10 9 14 14 N 1.31518 * 120.00144 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99733 * 179.97438 * 13 11 10 16 16 H 1.48490 * 109.47181 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46716 * 120.00463 * 15 13 11 18 18 H 1.48500 * 109.46999 * 240.00161 * 15 13 11 19 19 H 1.09002 * 109.46404 * 297.31393 * 1 2 3 20 20 H 1.08999 * 109.47122 * 57.31372 * 1 2 3 21 21 H 1.08995 * 109.47137 * 177.32130 * 1 2 3 22 22 H 1.09005 * 110.36900 * 24.16558 * 4 2 1 23 23 H 1.09000 * 110.37324 * 146.38664 * 4 2 1 24 24 H 1.09000 * 110.37360 * 281.68497 * 6 5 4 25 25 H 1.08994 * 110.37334 * 159.34524 * 6 5 4 26 26 H 1.09001 * 109.47103 * 300.00246 * 10 9 7 27 27 H 1.09004 * 109.47054 * 59.99750 * 10 9 7 28 28 H 0.96997 * 119.99752 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9129 1.0205 0.0000 4 6 2.0713 -0.7812 -1.2179 5 8 2.3069 -2.1177 -0.7240 6 6 2.8757 -1.9424 0.5918 7 6 2.0714 -0.7815 1.2179 8 1 1.2492 -1.1657 1.8214 9 8 2.9244 0.0499 2.0074 10 6 2.9275 -0.2755 3.3989 11 6 3.8559 0.6587 4.1312 12 1 4.3905 1.4241 3.5882 13 6 4.0229 0.5363 5.4943 14 7 3.3722 -0.3961 6.1554 15 14 5.1743 1.6938 6.4020 16 1 5.7814 2.6453 5.4371 17 1 4.4100 2.4491 7.4270 18 1 6.2463 0.9075 7.0636 19 1 -0.3632 0.4716 0.9131 20 1 -0.3633 0.5550 -0.8649 21 1 -0.3633 -1.0265 -0.0480 22 1 1.3310 -0.7973 -2.0179 23 1 3.0012 -0.3360 -1.5715 24 1 3.9301 -1.6764 0.5171 25 1 2.7535 -2.8504 1.1822 26 1 1.9185 -0.1726 3.7984 27 1 3.2675 -1.3026 3.5311 28 1 3.4900 -0.4824 7.1143 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703535006.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:48 Heat of formation + Delta-G solvation = -126.909939 kcal Electronic energy + Delta-G solvation = -11566.934341 eV Core-core repulsion = 9388.756101 eV Total energy + Delta-G solvation = -2178.178240 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.76336 -37.97211 -34.99648 -33.97796 -30.35481 -28.93619 -27.21206 -24.75188 -23.33073 -21.44673 -18.70906 -18.03809 -17.23478 -16.69192 -16.44048 -15.89592 -15.35441 -14.91227 -14.38581 -13.94193 -13.55410 -13.19781 -13.02996 -12.94460 -12.71209 -12.30993 -12.16799 -11.79638 -11.61619 -11.30223 -10.98472 -10.75017 -10.19201 -8.35227 -6.48270 1.39559 1.40748 1.55519 2.32012 2.80092 2.98812 3.19422 3.59790 3.82974 3.91745 4.17148 4.26816 4.51971 4.62482 4.70225 4.76924 4.80312 4.88397 4.95539 5.09714 5.14495 5.28162 5.51784 5.70539 5.91955 6.48300 6.76470 7.23916 8.77257 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.072573 B = 0.008583 C = 0.008433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 385.727910 B = 3261.294648 C = 3319.530652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.127 4.127 3 H 0.089 0.911 4 C 0.051 3.949 5 O -0.384 6.384 6 C 0.030 3.970 7 C 0.045 3.955 8 H 0.062 0.938 9 O -0.395 6.395 10 C 0.209 3.791 11 C -0.551 4.551 12 H 0.062 0.938 13 C 0.008 3.992 14 N -0.930 5.930 15 Si 0.984 3.016 16 H -0.264 1.264 17 H -0.271 1.271 18 H -0.271 1.271 19 H 0.048 0.952 20 H 0.086 0.914 21 H 0.061 0.939 22 H 0.122 0.878 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.095 0.905 26 H -0.013 1.013 27 H -0.011 1.011 28 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.496 0.284 -10.814 11.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.146 4.146 3 H 0.107 0.893 4 C -0.025 4.025 5 O -0.303 6.303 6 C -0.048 4.048 7 C -0.014 4.014 8 H 0.080 0.920 9 O -0.315 6.315 10 C 0.134 3.866 11 C -0.589 4.589 12 H 0.081 0.919 13 C -0.191 4.191 14 N -0.569 5.569 15 Si 0.807 3.193 16 H -0.188 1.188 17 H -0.196 1.196 18 H -0.196 1.196 19 H 0.067 0.933 20 H 0.105 0.895 21 H 0.080 0.920 22 H 0.140 0.860 23 H 0.085 0.915 24 H 0.080 0.920 25 H 0.113 0.887 26 H 0.005 0.995 27 H 0.007 0.993 28 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.464 0.154 -10.836 11.377 hybrid contribution 0.371 0.210 1.061 1.143 sum -3.093 0.364 -9.775 10.259 Atomic orbital electron populations 1.21769 0.92022 1.02591 1.02799 1.22627 0.98112 1.00598 0.93247 0.89300 1.23645 1.01207 0.81579 0.96106 1.89053 1.83199 1.27479 1.30591 1.23847 0.97592 0.99127 0.84191 1.23691 0.92664 0.91640 0.93384 0.91956 1.87871 1.65873 1.57185 1.20525 1.19917 0.95065 0.94856 0.76794 1.21418 1.26896 1.17278 0.93281 0.91938 1.25965 0.97782 0.97564 0.97793 1.70072 1.43191 1.34322 1.09300 0.85116 0.77990 0.78167 0.78015 1.18792 1.19611 1.19619 0.93265 0.89471 0.92017 0.85982 0.91550 0.91996 0.88725 0.99510 0.99320 0.91951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.27 8.94 71.98 0.64 -2.63 15 2 C -0.13 -3.80 3.53 -9.78 -0.03 -3.83 15 3 H 0.09 2.76 8.00 -2.39 -0.02 2.75 15 4 C 0.05 1.31 7.18 72.49 0.52 1.83 15 5 O -0.38 -12.24 11.65 -148.98 -1.74 -13.97 15 6 C 0.03 1.05 7.38 72.49 0.53 1.58 15 7 C 0.04 1.73 3.26 31.61 0.10 1.84 15 8 H 0.06 2.45 7.41 -2.39 -0.02 2.43 15 9 O -0.39 -19.40 9.96 -148.98 -1.48 -20.88 15 10 C 0.21 11.74 5.53 71.24 0.39 12.14 15 11 C -0.55 -32.85 9.43 25.60 0.24 -32.61 15 12 H 0.06 3.69 7.81 -2.91 -0.02 3.67 15 13 C 0.01 0.44 5.46 84.65 0.46 0.90 15 14 N -0.93 -55.72 13.29 21.45 0.28 -55.44 15 15 Si 0.98 44.14 29.54 68.60 2.03 46.17 15 16 H -0.26 -11.47 7.11 99.48 0.71 -10.77 15 17 H -0.27 -11.62 7.11 99.48 0.71 -10.91 15 18 H -0.27 -11.63 7.11 99.48 0.71 -10.93 15 19 H 0.05 1.30 8.14 -2.39 -0.02 1.28 15 20 H 0.09 1.59 8.14 -2.39 -0.02 1.57 15 21 H 0.06 1.45 8.14 -2.39 -0.02 1.43 15 22 H 0.12 2.35 7.87 -2.38 -0.02 2.33 15 23 H 0.07 1.63 8.14 -2.39 -0.02 1.61 15 24 H 0.06 2.27 8.08 -2.39 -0.02 2.25 15 25 H 0.09 3.20 8.14 -2.39 -0.02 3.18 15 26 H -0.01 -0.76 8.11 -2.39 -0.02 -0.78 15 27 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 15 28 H 0.27 15.01 8.31 -92.71 -0.77 14.24 15 Total: -1.00 -65.30 240.91 3.07 -62.22 By element: Atomic # 1 Polarization: 1.57 SS G_CDS: 1.12 Total: 2.68 kcal Atomic # 6 Polarization: -23.65 SS G_CDS: 2.87 Total: -20.78 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: 0.28 Total: -55.44 kcal Atomic # 8 Polarization: -31.63 SS G_CDS: -3.22 Total: -34.85 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -65.30 3.07 -62.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703535006.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.687 kcal (2) G-P(sol) polarization free energy of solvation -65.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds