Wall clock time and date at job start Mon Mar 30 2020 02:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 110.55986 * 2 1 4 4 C 1.54478 * 110.51027 * 122.67158 * 2 1 3 5 5 O 1.44425 * 104.80264 * 142.62758 * 4 2 1 6 6 C 1.44421 * 105.27489 * 319.49052 * 5 4 2 7 7 C 1.54479 * 104.80407 * 40.50865 * 6 5 4 8 8 H 1.08997 * 110.51129 * 94.80727 * 7 6 5 9 9 O 1.42898 * 110.51043 * 217.37847 * 7 6 5 10 10 C 1.42909 * 114.00197 * 268.54457 * 9 7 6 11 11 C 1.50696 * 109.47070 * 180.02562 * 10 9 7 12 12 H 1.07999 * 120.00202 * 359.97438 * 11 10 9 13 13 C 1.37884 * 119.99746 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99573 * 0.27650 * 13 11 10 15 15 Si 1.86800 * 119.99781 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47035 * 60.00183 * 15 13 11 17 17 H 1.48503 * 109.46845 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47237 * 299.99939 * 15 13 11 19 19 H 1.09006 * 109.46932 * 182.68311 * 1 2 3 20 20 H 1.08998 * 109.47446 * 302.68266 * 1 2 3 21 21 H 1.08997 * 109.47325 * 62.69039 * 1 2 3 22 22 H 1.08993 * 110.37381 * 23.79610 * 4 2 1 23 23 H 1.09005 * 110.46659 * 261.50521 * 4 2 1 24 24 H 1.09011 * 110.37024 * 281.68003 * 6 5 4 25 25 H 1.08996 * 110.37695 * 159.34316 * 6 5 4 26 26 H 1.09000 * 109.46355 * 60.00386 * 10 9 7 27 27 H 1.08999 * 109.46615 * 300.00542 * 10 9 7 28 28 H 0.97001 * 120.00651 * 359.71956 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9128 1.0206 0.0000 4 6 2.0712 -0.7810 1.2179 5 8 3.2398 -1.4712 0.7240 6 6 2.8758 -1.9421 -0.5918 7 6 2.0714 -0.7814 -1.2179 8 1 2.7214 -0.1485 -1.8221 9 8 0.9934 -1.2879 -2.0074 10 6 1.3244 -1.4882 -3.3831 11 6 0.1207 -2.0207 -4.1170 12 1 -0.8044 -2.1897 -3.5859 13 6 0.2008 -2.2931 -5.4662 14 7 1.3292 -2.0934 -6.1115 15 14 -1.2910 -2.9539 -6.3758 16 1 -2.4059 -1.9784 -6.2723 17 1 -0.9470 -3.1619 -7.8054 18 1 -1.7062 -4.2460 -5.7730 19 1 -0.3633 -1.0266 0.0481 20 1 -0.3634 0.5549 0.8649 21 1 -0.3634 0.4715 -0.9131 22 1 1.3286 -1.4968 1.5703 23 1 2.3461 -0.0950 2.0192 24 1 2.2564 -2.8360 -0.5170 25 1 3.7689 -2.1466 -1.1822 26 1 2.1429 -2.2041 -3.4592 27 1 1.6289 -0.5396 -3.8252 28 1 2.1040 -1.7506 -5.6391 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703535020.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:50 Heat of formation + Delta-G solvation = -128.713357 kcal Electronic energy + Delta-G solvation = -11692.121380 eV Core-core repulsion = 9513.864938 eV Total energy + Delta-G solvation = -2178.256442 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.85894 -38.10771 -35.31360 -33.96536 -30.23710 -28.55638 -27.16076 -24.90130 -23.74842 -21.22825 -19.33895 -17.85726 -17.48416 -16.70539 -16.18473 -15.76080 -15.46460 -15.17195 -14.48594 -14.16726 -13.68208 -13.30960 -13.17704 -12.73292 -12.59569 -12.05154 -11.97007 -11.91811 -11.53841 -11.01729 -10.86354 -10.80040 -10.33261 -8.85255 -6.56956 1.52474 1.60969 1.82092 2.46030 2.71727 3.01668 3.13330 3.51027 3.72157 3.79393 4.11200 4.25585 4.40763 4.47140 4.61432 4.65891 4.69789 4.75805 4.84989 5.00268 5.12020 5.39974 5.59510 5.66571 5.91303 6.30821 6.59514 7.23911 8.55844 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.069855 B = 0.009321 C = 0.008704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.736535 B = 3003.329816 C = 3216.179339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 H 0.104 0.896 4 C 0.050 3.950 5 O -0.385 6.385 6 C 0.030 3.970 7 C 0.039 3.961 8 H 0.062 0.938 9 O -0.376 6.376 10 C 0.195 3.805 11 C -0.624 4.624 12 H 0.055 0.945 13 C -0.028 4.028 14 N -0.928 5.928 15 Si 1.128 2.872 16 H -0.267 1.267 17 H -0.277 1.277 18 H -0.267 1.267 19 H 0.044 0.956 20 H 0.083 0.917 21 H 0.041 0.959 22 H 0.067 0.933 23 H 0.124 0.876 24 H 0.059 0.941 25 H 0.094 0.906 26 H -0.016 1.016 27 H -0.018 1.018 28 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.433 3.191 11.603 12.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.139 4.139 3 H 0.122 0.878 4 C -0.026 4.026 5 O -0.304 6.304 6 C -0.048 4.048 7 C -0.020 4.020 8 H 0.080 0.920 9 O -0.295 6.295 10 C 0.120 3.880 11 C -0.662 4.662 12 H 0.073 0.927 13 C -0.225 4.225 14 N -0.564 5.564 15 Si 0.946 3.054 16 H -0.192 1.192 17 H -0.202 1.202 18 H -0.192 1.192 19 H 0.064 0.936 20 H 0.101 0.899 21 H 0.060 0.940 22 H 0.085 0.915 23 H 0.142 0.858 24 H 0.078 0.922 25 H 0.112 0.888 26 H 0.002 0.998 27 H -0.001 1.001 28 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.932 2.633 10.331 10.702 hybrid contribution 1.052 0.585 1.036 1.588 sum 0.120 3.218 11.367 11.814 Atomic orbital electron populations 1.21409 0.92955 1.01813 1.01736 1.22661 0.98217 1.00122 0.92905 0.87797 1.23721 0.87343 0.95388 0.96198 1.89060 1.36477 1.74304 1.30589 1.23854 0.99689 0.96945 0.84281 1.23646 0.89502 0.95051 0.93785 0.92027 1.87935 1.35824 1.85001 1.20783 1.20022 0.96092 0.92992 0.78895 1.22254 0.98736 1.48343 0.96826 0.92657 1.27595 1.04824 0.94442 0.95666 1.70930 1.02419 1.43386 1.39693 0.82823 0.70712 0.76965 0.74860 1.19150 1.20214 1.19203 0.93638 0.89870 0.93961 0.91518 0.85816 0.92233 0.88808 0.99847 1.00062 0.93528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.55 8.20 71.98 0.59 -2.96 15 2 C -0.12 -3.48 3.72 -9.78 -0.04 -3.52 15 3 H 0.10 2.57 8.14 -2.38 -0.02 2.55 15 4 C 0.05 1.25 7.18 72.48 0.52 1.77 15 5 O -0.39 -12.16 11.65 -148.98 -1.74 -13.90 15 6 C 0.03 1.03 7.38 72.48 0.53 1.57 15 7 C 0.04 1.47 3.55 31.61 0.11 1.58 15 8 H 0.06 2.33 7.86 -2.39 -0.02 2.31 15 9 O -0.38 -17.95 8.29 -148.98 -1.24 -19.18 15 10 C 0.20 10.76 4.87 71.23 0.35 11.10 15 11 C -0.62 -37.19 9.43 25.60 0.24 -36.95 15 12 H 0.06 3.28 7.81 -2.91 -0.02 3.26 15 13 C -0.03 -1.61 5.46 84.66 0.46 -1.14 15 14 N -0.93 -57.17 13.65 21.45 0.29 -56.88 15 15 Si 1.13 49.94 29.90 68.60 2.05 51.99 15 16 H -0.27 -10.93 7.11 99.48 0.71 -10.23 15 17 H -0.28 -12.05 7.11 99.48 0.71 -11.34 15 18 H -0.27 -10.98 7.11 99.48 0.71 -10.28 15 19 H 0.04 1.46 7.86 -2.38 -0.02 1.44 15 20 H 0.08 1.79 8.14 -2.39 -0.02 1.77 15 21 H 0.04 1.42 7.91 -2.39 -0.02 1.40 15 22 H 0.07 1.62 7.83 -2.39 -0.02 1.60 15 23 H 0.12 2.27 8.14 -2.38 -0.02 2.25 15 24 H 0.06 2.18 8.09 -2.38 -0.02 2.16 15 25 H 0.09 3.13 8.14 -2.39 -0.02 3.11 15 26 H -0.02 -0.91 8.00 -2.39 -0.02 -0.93 15 27 H -0.02 -1.04 7.98 -2.39 -0.02 -1.06 15 28 H 0.26 15.88 7.22 -92.71 -0.67 15.21 15 Total: -1.00 -66.62 237.73 3.36 -63.26 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: 1.22 Total: 3.25 kcal Atomic # 6 Polarization: -31.32 SS G_CDS: 2.77 Total: -28.55 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: 0.29 Total: -56.88 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -2.97 Total: -33.08 kcal Atomic # 14 Polarization: 49.94 SS G_CDS: 2.05 Total: 51.99 kcal Total: -66.62 3.36 -63.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703535020.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.451 kcal (2) G-P(sol) polarization free energy of solvation -66.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds