Wall clock time and date at job start Mon Mar 30 2020 02:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 110.46017 * 2 1 4 4 C 1.54489 * 110.50956 * 237.24908 * 2 1 3 5 5 O 1.44415 * 104.80378 * 217.38002 * 4 2 1 6 6 C 1.44643 * 105.37333 * 40.43340 * 5 4 2 7 7 C 1.54481 * 104.69437 * 319.65347 * 6 5 4 8 8 H 1.09002 * 110.51319 * 265.09514 * 7 6 5 9 9 O 1.42905 * 110.50868 * 142.52161 * 7 6 5 10 10 C 1.42899 * 113.99778 * 93.30839 * 9 7 6 11 11 C 1.50699 * 109.46785 * 179.97438 * 10 9 7 12 12 H 1.07994 * 120.00689 * 359.97438 * 11 10 9 13 13 C 1.37883 * 119.99662 * 180.02562 * 11 10 9 14 14 N 1.31510 * 120.00357 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99656 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47213 * 89.99792 * 15 13 11 17 17 H 1.48503 * 109.46756 * 209.99957 * 15 13 11 18 18 H 1.48499 * 109.47025 * 329.99577 * 15 13 11 19 19 H 1.09003 * 109.46496 * 297.39372 * 1 2 3 20 20 H 1.09001 * 109.46906 * 57.38626 * 1 2 3 21 21 H 1.09000 * 109.47377 * 177.39228 * 1 2 3 22 22 H 1.09002 * 110.37081 * 336.21427 * 4 2 1 23 23 H 1.08999 * 110.37030 * 98.54202 * 4 2 1 24 24 H 1.09000 * 110.50890 * 200.81697 * 6 5 4 25 25 H 1.09001 * 110.33693 * 78.40513 * 6 5 4 26 26 H 1.08997 * 109.47171 * 299.99768 * 10 9 7 27 27 H 1.08997 * 109.47442 * 59.99964 * 10 9 7 28 28 H 0.97001 * 120.00525 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0713 -0.7828 -1.2169 5 8 3.2397 -1.4724 -0.7221 6 6 2.8779 -1.9416 0.5974 7 6 2.0715 -0.7799 1.2190 8 1 2.7201 -0.1442 1.8217 9 8 0.9933 -1.2854 2.0091 10 6 1.3107 -1.4413 3.3936 11 6 0.1082 -1.9766 4.1274 12 1 -0.8070 -2.1772 3.5904 13 6 0.1762 -2.2091 5.4848 14 7 1.2904 -1.9644 6.1390 15 14 -1.3142 -2.8734 6.3943 16 1 -1.2761 -4.3578 6.3893 17 1 -1.2982 -2.3824 7.7957 18 1 -2.5531 -2.4077 5.7208 19 1 -0.3632 0.4729 0.9125 20 1 -0.3633 0.5539 -0.8656 21 1 -0.3634 -1.0266 -0.0468 22 1 1.3285 -1.4989 -1.5684 23 1 2.3464 -0.0964 -2.0177 24 1 3.7708 -2.1430 1.1892 25 1 2.2598 -2.8365 0.5249 26 1 2.1416 -2.1387 3.4996 27 1 1.5915 -0.4752 3.8131 28 1 1.3381 -2.1276 7.0940 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703535023.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:51 Heat of formation + Delta-G solvation = -104.023407 kcal Electronic energy + Delta-G solvation = -11657.739896 eV Core-core repulsion = 9480.554091 eV Total energy + Delta-G solvation = -2177.185805 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.33223 -36.17720 -33.04220 -32.33897 -28.68896 -26.91514 -25.86205 -22.72409 -22.10565 -19.72246 -16.77459 -16.20473 -15.69642 -15.14653 -14.73998 -14.32998 -13.65601 -13.28578 -12.86034 -12.30426 -11.95983 -11.64528 -11.40122 -10.97559 -10.84429 -10.65166 -10.51675 -10.25361 -9.93091 -9.58004 -9.15427 -8.85938 -8.21399 -6.15109 -4.17378 3.27808 3.33028 3.37912 4.16145 4.34949 4.76658 4.99293 5.07104 5.21098 5.28527 5.53983 5.74531 5.78153 5.89092 6.00585 6.10206 6.18516 6.28661 6.46077 6.74894 6.98640 7.08315 7.36454 7.75009 8.09794 8.50235 8.95414 9.47768 10.96323 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.070211 B = 0.009250 C = 0.008656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 398.704043 B = 3026.394933 C = 3233.911492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.126 4.126 3 H 0.081 0.919 4 C 0.050 3.950 5 O -0.382 6.382 6 C 0.024 3.976 7 C 0.060 3.940 8 H 0.066 0.934 9 O -0.376 6.376 10 C 0.192 3.808 11 C -0.516 4.516 12 H 0.067 0.933 13 C 0.057 3.943 14 N -0.898 5.898 15 Si 0.908 3.092 16 H -0.278 1.278 17 H -0.285 1.285 18 H -0.271 1.271 19 H 0.066 0.934 20 H 0.043 0.957 21 H 0.062 0.938 22 H 0.060 0.940 23 H 0.086 0.914 24 H 0.090 0.910 25 H 0.069 0.931 26 H 0.006 0.994 27 H 0.006 0.994 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.599 2.684 -10.019 10.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.145 4.145 3 H 0.099 0.901 4 C -0.027 4.027 5 O -0.301 6.301 6 C -0.053 4.053 7 C 0.000 4.000 8 H 0.084 0.916 9 O -0.295 6.295 10 C 0.118 3.882 11 C -0.555 4.555 12 H 0.085 0.915 13 C -0.144 4.144 14 N -0.537 5.537 15 Si 0.735 3.265 16 H -0.204 1.204 17 H -0.211 1.211 18 H -0.196 1.196 19 H 0.085 0.915 20 H 0.062 0.938 21 H 0.081 0.919 22 H 0.078 0.922 23 H 0.104 0.896 24 H 0.109 0.891 25 H 0.088 0.912 26 H 0.023 0.977 27 H 0.024 0.976 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.694 2.598 -10.010 10.365 hybrid contribution -0.522 -0.260 0.915 1.085 sum 0.172 2.339 -9.095 9.393 Atomic orbital electron populations 1.21453 0.93100 1.02547 1.01192 1.22599 0.98122 0.99305 0.94439 0.90061 1.23482 0.88012 0.94933 0.96229 1.89080 1.35345 1.74180 1.31451 1.24057 0.99955 0.97935 0.83322 1.23212 0.90018 0.93918 0.92870 0.91643 1.87942 1.34626 1.84674 1.22252 1.20292 0.97017 0.95480 0.75391 1.21037 0.98374 1.43415 0.92638 0.91516 1.24950 0.96708 0.95581 0.97192 1.69956 1.26126 1.48487 1.09112 0.86333 0.82385 0.79107 0.78659 1.20431 1.21060 1.19614 0.91517 0.93766 0.91919 0.92179 0.89590 0.89144 0.91229 0.97652 0.97597 0.92591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 8.20 37.16 0.30 -1.63 15 2 C -0.13 -1.96 3.72 -89.04 -0.33 -2.29 15 3 H 0.08 1.14 8.14 -51.93 -0.42 0.71 15 4 C 0.05 0.71 7.19 37.94 0.27 0.99 15 5 O -0.38 -6.44 11.65 -35.23 -0.41 -6.85 15 6 C 0.02 0.43 7.40 37.93 0.28 0.71 15 7 C 0.06 1.13 3.56 -25.16 -0.09 1.04 15 8 H 0.07 1.24 7.84 -51.93 -0.41 0.83 15 9 O -0.38 -8.74 8.29 -35.23 -0.29 -9.03 15 10 C 0.19 5.17 5.54 36.01 0.20 5.37 15 11 C -0.52 -14.97 9.43 -34.44 -0.32 -15.29 15 12 H 0.07 1.92 7.81 -52.49 -0.41 1.51 15 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 15 14 N -0.90 -26.64 13.29 55.43 0.74 -25.91 15 15 Si 0.91 21.62 29.54 -169.99 -5.02 16.60 15 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 18 H -0.27 -6.34 7.11 56.52 0.40 -5.94 15 19 H 0.07 1.14 7.91 -51.93 -0.41 0.73 15 20 H 0.04 0.55 8.14 -51.93 -0.42 0.12 15 21 H 0.06 1.03 7.86 -51.93 -0.41 0.63 15 22 H 0.06 0.82 7.83 -51.93 -0.41 0.41 15 23 H 0.09 1.00 8.14 -51.93 -0.42 0.58 15 24 H 0.09 1.51 8.14 -51.93 -0.42 1.09 15 25 H 0.07 1.26 8.08 -51.93 -0.42 0.84 15 26 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 15 27 H 0.01 0.17 8.11 -51.93 -0.42 -0.25 15 28 H 0.26 7.35 8.31 -40.82 -0.34 7.01 15 LS Contribution 239.04 15.07 3.60 3.60 Total: -1.00 -30.20 239.04 -5.30 -35.50 By element: Atomic # 1 Polarization: -0.23 SS G_CDS: -4.13 Total: -4.36 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: 0.21 Total: -9.57 kcal Atomic # 7 Polarization: -26.64 SS G_CDS: 0.74 Total: -25.91 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -0.70 Total: -15.88 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -30.20 -5.30 -35.50 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703535023.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.519 kcal (2) G-P(sol) polarization free energy of solvation -30.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds