Wall clock time and date at job start Mon Mar 30 2020 02:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 110.46017 * 2 1 4 4 C 1.54489 * 110.50956 * 237.24908 * 2 1 3 5 5 O 1.44415 * 104.80378 * 217.38002 * 4 2 1 6 6 C 1.44643 * 105.37333 * 40.43340 * 5 4 2 7 7 C 1.54481 * 104.69437 * 319.65347 * 6 5 4 8 8 H 1.09002 * 110.51319 * 265.09514 * 7 6 5 9 9 O 1.42905 * 110.50868 * 142.52161 * 7 6 5 10 10 C 1.42899 * 113.99778 * 93.30839 * 9 7 6 11 11 C 1.50699 * 109.46785 * 179.97438 * 10 9 7 12 12 H 1.07994 * 120.00689 * 359.97438 * 11 10 9 13 13 C 1.37883 * 119.99662 * 180.02562 * 11 10 9 14 14 N 1.31510 * 120.00357 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99656 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47213 * 89.99792 * 15 13 11 17 17 H 1.48503 * 109.46756 * 209.99957 * 15 13 11 18 18 H 1.48499 * 109.47025 * 329.99577 * 15 13 11 19 19 H 1.09003 * 109.46496 * 297.39372 * 1 2 3 20 20 H 1.09001 * 109.46906 * 57.38626 * 1 2 3 21 21 H 1.09000 * 109.47377 * 177.39228 * 1 2 3 22 22 H 1.09002 * 110.37081 * 336.21427 * 4 2 1 23 23 H 1.08999 * 110.37030 * 98.54202 * 4 2 1 24 24 H 1.09000 * 110.50890 * 200.81697 * 6 5 4 25 25 H 1.09001 * 110.33693 * 78.40513 * 6 5 4 26 26 H 1.08997 * 109.47171 * 299.99768 * 10 9 7 27 27 H 1.08997 * 109.47442 * 59.99964 * 10 9 7 28 28 H 0.97001 * 120.00525 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0713 -0.7828 -1.2169 5 8 3.2397 -1.4724 -0.7221 6 6 2.8779 -1.9416 0.5974 7 6 2.0715 -0.7799 1.2190 8 1 2.7201 -0.1442 1.8217 9 8 0.9933 -1.2854 2.0091 10 6 1.3107 -1.4413 3.3936 11 6 0.1082 -1.9766 4.1274 12 1 -0.8070 -2.1772 3.5904 13 6 0.1762 -2.2091 5.4848 14 7 1.2904 -1.9644 6.1390 15 14 -1.3142 -2.8734 6.3943 16 1 -1.2761 -4.3578 6.3893 17 1 -1.2982 -2.3824 7.7957 18 1 -2.5531 -2.4077 5.7208 19 1 -0.3632 0.4729 0.9125 20 1 -0.3633 0.5539 -0.8656 21 1 -0.3634 -1.0266 -0.0468 22 1 1.3285 -1.4989 -1.5684 23 1 2.3464 -0.0964 -2.0177 24 1 3.7708 -2.1430 1.1892 25 1 2.2598 -2.8365 0.5249 26 1 2.1416 -2.1387 3.4996 27 1 1.5915 -0.4752 3.8131 28 1 1.3381 -2.1276 7.0940 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703535023.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:51 Heat of formation + Delta-G solvation = -124.549635 kcal Electronic energy + Delta-G solvation = -11658.629980 eV Core-core repulsion = 9480.554091 eV Total energy + Delta-G solvation = -2178.075889 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.73860 -37.92126 -35.00990 -33.89047 -30.30327 -28.91400 -27.08588 -24.72233 -23.62941 -21.13382 -18.73632 -17.89407 -17.22521 -16.67299 -16.45074 -15.99012 -15.35080 -14.90039 -14.39728 -14.01684 -13.33826 -13.19030 -13.12468 -12.83699 -12.70121 -12.17971 -11.96658 -11.90712 -11.47100 -11.26147 -10.96210 -10.78646 -10.19633 -8.33795 -6.46391 1.39820 1.42265 1.54246 2.32624 2.81710 3.00392 3.24428 3.61001 3.81450 3.89161 4.20512 4.34924 4.55303 4.62309 4.71545 4.76209 4.82254 4.87880 5.06002 5.16100 5.19909 5.47233 5.53186 5.71057 5.94001 6.50426 6.78723 7.25631 8.78440 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.070211 B = 0.009250 C = 0.008656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 398.704043 B = 3026.394933 C = 3233.911492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.122 4.122 3 H 0.102 0.898 4 C 0.050 3.950 5 O -0.388 6.388 6 C 0.030 3.970 7 C 0.042 3.958 8 H 0.060 0.940 9 O -0.383 6.383 10 C 0.208 3.792 11 C -0.548 4.548 12 H 0.063 0.937 13 C 0.007 3.993 14 N -0.930 5.930 15 Si 0.983 3.017 16 H -0.268 1.268 17 H -0.275 1.275 18 H -0.264 1.264 19 H 0.042 0.958 20 H 0.080 0.920 21 H 0.046 0.954 22 H 0.067 0.933 23 H 0.122 0.878 24 H 0.094 0.906 25 H 0.061 0.939 26 H -0.013 1.013 27 H -0.015 1.015 28 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.203 2.821 -10.854 11.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.140 4.140 3 H 0.120 0.880 4 C -0.026 4.026 5 O -0.307 6.307 6 C -0.047 4.047 7 C -0.017 4.017 8 H 0.078 0.922 9 O -0.302 6.302 10 C 0.133 3.867 11 C -0.586 4.586 12 H 0.081 0.919 13 C -0.191 4.191 14 N -0.570 5.570 15 Si 0.805 3.195 16 H -0.193 1.193 17 H -0.200 1.200 18 H -0.188 1.188 19 H 0.061 0.939 20 H 0.099 0.901 21 H 0.065 0.935 22 H 0.085 0.915 23 H 0.140 0.860 24 H 0.112 0.888 25 H 0.079 0.921 26 H 0.005 0.995 27 H 0.003 0.997 28 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.098 2.743 -10.872 11.213 hybrid contribution -0.221 -0.256 1.101 1.151 sum -0.319 2.487 -9.771 10.088 Atomic orbital electron populations 1.21409 0.92970 1.01837 1.01661 1.22671 0.98226 1.00060 0.93083 0.88009 1.23702 0.87369 0.95337 0.96190 1.89078 1.36548 1.74443 1.30610 1.23893 0.99728 0.97046 0.84035 1.23583 0.89527 0.94945 0.93671 0.92172 1.87906 1.36484 1.85177 1.20631 1.19887 0.95863 0.93646 0.77303 1.21377 0.98884 1.44646 0.93689 0.91876 1.25950 1.00060 0.95260 0.97857 1.70064 1.28299 1.48850 1.09750 0.85188 0.78249 0.78708 0.77311 1.19330 1.20007 1.18795 0.93871 0.90101 0.93529 0.91512 0.86032 0.88818 0.92067 0.99497 0.99694 0.92027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.55 8.20 71.98 0.59 -2.96 15 2 C -0.12 -3.56 3.72 -9.77 -0.04 -3.59 15 3 H 0.10 2.57 8.14 -2.39 -0.02 2.56 15 4 C 0.05 1.28 7.19 72.49 0.52 1.80 15 5 O -0.39 -12.37 11.65 -148.98 -1.74 -14.10 15 6 C 0.03 1.06 7.40 72.49 0.54 1.60 15 7 C 0.04 1.58 3.56 31.61 0.11 1.70 15 8 H 0.06 2.32 7.84 -2.39 -0.02 2.30 15 9 O -0.38 -18.21 8.29 -148.98 -1.24 -19.44 15 10 C 0.21 11.56 5.54 71.24 0.39 11.96 15 11 C -0.55 -32.35 9.43 25.60 0.24 -32.11 15 12 H 0.06 3.67 7.81 -2.91 -0.02 3.65 15 13 C 0.01 0.42 5.46 84.66 0.46 0.88 15 14 N -0.93 -55.72 13.29 21.45 0.28 -55.43 15 15 Si 0.98 44.03 29.54 68.60 2.03 46.06 15 16 H -0.27 -11.54 7.11 99.48 0.71 -10.83 15 17 H -0.28 -11.81 7.11 99.48 0.71 -11.11 15 18 H -0.26 -11.41 7.11 99.48 0.71 -10.70 15 19 H 0.04 1.45 7.91 -2.39 -0.02 1.43 15 20 H 0.08 1.76 8.14 -2.39 -0.02 1.74 15 21 H 0.05 1.49 7.86 -2.39 -0.02 1.47 15 22 H 0.07 1.64 7.83 -2.39 -0.02 1.62 15 23 H 0.12 2.29 8.14 -2.39 -0.02 2.27 15 24 H 0.09 3.16 8.14 -2.39 -0.02 3.14 15 25 H 0.06 2.24 8.08 -2.39 -0.02 2.22 15 26 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 15 27 H -0.01 -0.86 8.11 -2.39 -0.02 -0.88 15 28 H 0.27 15.03 8.31 -92.71 -0.77 14.26 15 Total: -1.00 -64.54 239.04 3.28 -61.26 By element: Atomic # 1 Polarization: 1.27 SS G_CDS: 1.12 Total: 2.39 kcal Atomic # 6 Polarization: -23.55 SS G_CDS: 2.82 Total: -20.73 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: 0.28 Total: -55.43 kcal Atomic # 8 Polarization: -30.57 SS G_CDS: -2.97 Total: -33.54 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -64.54 3.28 -61.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703535023.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.293 kcal (2) G-P(sol) polarization free energy of solvation -64.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds