Wall clock time and date at job start Mon Mar 30 2020 02:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47594 * 2 1 4 4 C 1.53003 * 109.47209 * 239.99873 * 2 1 3 5 5 C 1.50706 * 109.47233 * 175.00032 * 4 2 1 6 6 H 1.07995 * 119.99575 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99867 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99931 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 119.99902 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46886 * 60.00509 * 9 7 5 11 11 H 1.48495 * 109.47157 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47147 * 300.00379 * 9 7 5 13 13 O 1.42903 * 109.47393 * 119.99983 * 2 1 3 14 14 C 1.42908 * 113.99628 * 269.99999 * 13 2 1 15 15 C 1.53367 * 114.56238 * 149.99788 * 14 13 2 16 16 O 1.43348 * 88.49370 * 86.62821 * 15 14 13 17 17 C 1.43342 * 88.32461 * 28.12684 * 16 15 14 18 18 H 1.08995 * 109.47030 * 180.02562 * 1 2 3 19 19 H 1.08996 * 109.46919 * 300.00113 * 1 2 3 20 20 H 1.09000 * 109.46978 * 60.00573 * 1 2 3 21 21 H 1.09006 * 109.47007 * 294.99912 * 4 2 1 22 22 H 1.08991 * 109.47318 * 54.99774 * 4 2 1 23 23 H 0.97008 * 119.99962 * 179.97438 * 8 7 5 24 24 H 1.08993 * 113.56613 * 15.71992 * 14 13 2 25 25 H 1.09002 * 113.39529 * 331.70733 * 15 14 13 26 26 H 1.09005 * 113.38849 * 201.55025 * 15 14 13 27 27 H 1.09005 * 113.39677 * 86.74628 * 17 16 15 28 28 H 1.08999 * 113.39618 * 216.90341 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5420 -0.6150 -1.3127 6 1 4.0789 -0.0855 -0.5396 7 6 4.2305 -1.1936 -2.3578 8 7 3.5764 -1.8379 -3.2994 9 14 6.0921 -1.0612 -2.4368 10 1 6.6846 -1.6863 -1.2271 11 1 6.5871 -1.7613 -3.6492 12 1 6.4845 0.3698 -2.4973 13 8 2.0064 -0.6736 1.1668 14 6 2.2001 0.1831 2.2941 15 6 1.9969 -0.4967 3.6538 16 8 3.3700 -0.9061 3.6119 17 6 3.6454 0.2468 2.8059 18 1 -0.3633 -1.0276 0.0005 19 1 -0.3633 0.5138 0.8899 20 1 -0.3633 0.5137 -0.8900 21 1 1.7517 -1.7716 -1.2055 22 1 1.6054 -0.2619 -2.1369 23 1 4.0608 -2.2447 -4.0349 24 1 1.7111 1.1520 2.1942 25 1 1.2955 -1.3304 3.6203 26 1 1.7786 0.2042 4.4596 27 1 3.8578 1.1425 3.3898 28 1 4.3890 0.0649 2.0300 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709999384.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:04 Heat of formation + Delta-G solvation = -85.641619 kcal Electronic energy + Delta-G solvation = -11694.296968 eV Core-core repulsion = 9517.908257 eV Total energy + Delta-G solvation = -2176.388711 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.63452 -38.51882 -35.17710 -32.97070 -29.80073 -29.29717 -27.11690 -25.20738 -22.13125 -21.51458 -18.52192 -17.94661 -17.42361 -16.75123 -16.54257 -16.26774 -15.23150 -14.92004 -14.19218 -13.74977 -13.50831 -13.31064 -13.08249 -12.70788 -12.61261 -12.37949 -11.93806 -11.55546 -11.30624 -11.20627 -10.79562 -10.57109 -10.22262 -8.19079 -6.27502 1.37422 1.41429 1.48531 2.40893 2.55607 3.13714 3.25302 3.34740 4.11813 4.19270 4.34132 4.39430 4.47015 4.55012 4.62716 4.73045 4.91085 5.00373 5.14936 5.18651 5.26662 5.43870 5.52702 5.80099 6.22954 6.57676 6.85260 7.39427 8.92883 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.038306 B = 0.012722 C = 0.010082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.772892 B = 2200.306914 C = 2776.559710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.094 3.906 3 H 0.061 0.939 4 C 0.024 3.976 5 C -0.526 4.526 6 H 0.055 0.945 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.959 3.041 10 H -0.275 1.275 11 H -0.281 1.281 12 H -0.262 1.262 13 O -0.369 6.369 14 C 0.010 3.990 15 C 0.030 3.970 16 O -0.403 6.403 17 C 0.004 3.996 18 H 0.048 0.952 19 H 0.076 0.924 20 H 0.070 0.930 21 H -0.011 1.011 22 H 0.016 0.984 23 H 0.263 0.737 24 H 0.111 0.889 25 H 0.086 0.914 26 H 0.130 0.870 27 H 0.124 0.876 28 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.834 7.393 11.115 13.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 H 0.079 0.921 4 C -0.013 4.013 5 C -0.564 4.564 6 H 0.073 0.927 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.784 3.216 10 H -0.201 1.201 11 H -0.207 1.207 12 H -0.186 1.186 13 O -0.288 6.288 14 C -0.049 4.049 15 C -0.046 4.046 16 O -0.322 6.322 17 C -0.072 4.072 18 H 0.067 0.933 19 H 0.095 0.905 20 H 0.089 0.911 21 H 0.008 0.992 22 H 0.035 0.965 23 H 0.072 0.928 24 H 0.128 0.872 25 H 0.104 0.896 26 H 0.148 0.852 27 H 0.142 0.858 28 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.622 6.874 11.061 13.517 hybrid contribution 0.867 -0.106 -0.566 1.041 sum -2.755 6.768 10.495 12.788 Atomic orbital electron populations 1.22246 0.94793 1.02126 1.02823 1.22336 0.93509 0.95416 0.85026 0.92128 1.19146 0.95476 0.94752 0.91947 1.21486 0.93367 1.33987 1.07539 0.92656 1.25911 1.03523 0.95019 0.95442 1.70076 1.37564 1.37089 1.12849 0.85586 0.79701 0.78910 0.77392 1.20094 1.20665 1.18609 1.88023 1.85921 1.34931 1.19964 1.24579 0.96418 0.95706 0.88215 1.24212 0.84357 1.00301 0.95724 1.89825 1.25135 1.43229 1.74031 1.24450 0.98960 0.90020 0.93818 0.93304 0.90527 0.91082 0.99250 0.96548 0.92838 0.87171 0.89609 0.85211 0.85821 0.91627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.28 9.53 71.98 0.69 -4.60 15 2 C 0.09 3.89 2.56 30.59 0.08 3.97 15 3 H 0.06 2.33 7.70 -2.39 -0.02 2.32 15 4 C 0.02 1.28 4.68 29.85 0.14 1.42 15 5 C -0.53 -30.72 8.88 25.60 0.23 -30.50 15 6 H 0.06 3.13 7.74 -2.91 -0.02 3.11 15 7 C 0.00 -0.10 5.46 84.65 0.46 0.36 15 8 N -0.93 -58.23 13.29 21.45 0.28 -57.94 15 9 Si 0.96 45.77 29.54 68.60 2.03 47.80 15 10 H -0.28 -13.02 7.11 99.48 0.71 -12.31 15 11 H -0.28 -13.05 7.11 99.48 0.71 -12.34 15 12 H -0.26 -11.72 7.11 99.48 0.71 -11.01 15 13 O -0.37 -15.63 9.82 -138.57 -1.36 -16.99 15 14 C 0.01 0.30 4.66 30.87 0.14 0.44 15 15 C 0.03 0.79 8.59 63.84 0.55 1.34 15 16 O -0.40 -14.24 12.74 -138.57 -1.77 -16.01 15 17 C 0.00 0.13 8.60 63.87 0.55 0.68 15 18 H 0.05 1.67 8.14 -2.39 -0.02 1.65 15 19 H 0.08 1.95 8.14 -2.39 -0.02 1.93 15 20 H 0.07 2.15 8.14 -2.39 -0.02 2.13 15 21 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 15 22 H 0.02 0.91 8.14 -2.39 -0.02 0.89 15 23 H 0.26 15.42 8.31 -92.70 -0.77 14.65 15 24 H 0.11 2.57 7.75 -2.39 -0.02 2.55 15 25 H 0.09 2.28 8.14 -2.39 -0.02 2.26 15 26 H 0.13 2.17 8.14 -2.38 -0.02 2.15 15 27 H 0.12 2.65 8.14 -2.38 -0.02 2.63 15 28 H 0.07 2.41 8.14 -2.39 -0.02 2.39 15 Total: -1.00 -70.83 244.45 3.14 -67.69 By element: Atomic # 1 Polarization: 1.21 SS G_CDS: 1.12 Total: 2.33 kcal Atomic # 6 Polarization: -29.71 SS G_CDS: 2.84 Total: -26.88 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: 0.28 Total: -57.94 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -3.13 Total: -33.00 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -70.83 3.14 -67.69 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709999384.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.947 kcal (2) G-P(sol) polarization free energy of solvation -70.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds