Wall clock time and date at job start Mon Mar 30 2020 02:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99938 * 2 1 4 4 H 1.48499 * 109.46897 * 270.00094 * 3 2 1 5 5 H 1.48500 * 109.47028 * 30.00102 * 3 2 1 6 6 H 1.48495 * 109.46818 * 149.99965 * 3 2 1 7 7 C 1.37883 * 119.99904 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99649 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99662 * 179.97438 * 7 2 1 10 10 O 1.42899 * 109.46785 * 180.02562 * 9 7 2 11 11 C 1.42905 * 113.99778 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46728 * 179.97438 * 11 10 9 13 13 O 1.42904 * 109.47221 * 65.00652 * 12 11 10 14 14 C 1.42898 * 113.99912 * 179.97438 * 13 12 11 15 15 C 1.53000 * 117.49899 * 218.61761 * 14 13 12 16 16 C 1.52997 * 60.00102 * 252.51073 * 15 14 13 17 17 H 0.96993 * 120.00083 * 359.97438 * 1 2 3 18 18 H 1.08997 * 109.47198 * 60.00162 * 9 7 2 19 19 H 1.08997 * 109.47040 * 300.00196 * 9 7 2 20 20 H 1.09000 * 109.47187 * 300.00233 * 11 10 9 21 21 H 1.09001 * 109.46558 * 60.00281 * 11 10 9 22 22 H 1.09000 * 109.46738 * 185.00163 * 12 11 10 23 23 H 1.08994 * 109.47465 * 305.00250 * 12 11 10 24 24 H 1.08995 * 115.55264 * 4.32491 * 14 13 12 25 25 H 1.09000 * 117.49576 * 0.02562 * 15 14 13 26 26 H 1.08998 * 117.50181 * 145.01779 * 15 14 13 27 27 H 1.08999 * 117.50182 * 252.50399 * 16 15 14 28 28 H 1.09003 * 117.51559 * 107.47812 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5466 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 8 3.9879 -2.5413 0.0001 11 6 5.4124 -2.6541 -0.0010 12 6 5.8069 -4.1324 -0.0002 13 8 5.3786 -4.7404 -1.2204 14 6 5.7003 -6.1290 -1.3221 15 6 6.1465 -6.6527 -2.6886 16 6 4.7621 -7.0130 -2.1462 17 1 -0.4850 0.8400 0.0004 18 1 3.8752 -0.6796 0.8894 19 1 3.8745 -0.6808 -0.8905 20 1 5.8145 -2.1709 -0.8915 21 1 5.8158 -2.1703 0.8885 22 1 6.8898 -4.2194 0.0886 23 1 5.3318 -4.6348 0.8424 24 1 6.1611 -6.5707 -0.4386 25 1 6.1951 -5.9378 -3.5101 26 1 6.9012 -7.4389 -2.7044 27 1 4.6058 -8.0364 -1.8051 28 1 3.8993 -6.5354 -2.6106 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712031352.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:40 Heat of formation + Delta-G solvation = -65.329386 kcal Electronic energy + Delta-G solvation = -11077.043878 eV Core-core repulsion = 8901.535971 eV Total energy + Delta-G solvation = -2175.507907 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.44753 -36.82437 -34.73300 -32.60182 -29.63996 -27.38305 -22.36884 -22.22601 -21.87317 -21.75976 -17.19600 -16.80165 -15.89820 -15.27220 -14.86778 -14.44499 -14.06662 -13.69632 -13.01115 -12.48338 -11.93629 -11.62650 -11.51274 -11.31305 -10.89448 -10.78537 -10.48301 -10.36462 -9.84610 -9.16425 -8.96194 -8.83728 -8.44983 -6.08844 -4.07646 3.26787 3.33213 3.34705 3.63586 3.87972 4.37723 4.62562 4.82038 4.99462 5.14569 5.22270 5.36112 5.51668 5.54387 5.62934 5.83945 5.92288 5.94544 6.12030 6.17938 6.61622 7.01980 7.42456 7.62028 8.03925 8.69386 9.03342 9.50338 11.04319 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.066027 B = 0.007486 C = 0.007033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.969094 B = 3739.219363 C = 3980.019305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.071 3.929 3 Si 0.877 3.123 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.083 0.917 9 C 0.168 3.832 10 O -0.374 6.374 11 C 0.058 3.942 12 C 0.069 3.931 13 O -0.342 6.342 14 C 0.017 3.983 15 C -0.194 4.194 16 C -0.185 4.185 17 H 0.266 0.734 18 H 0.003 0.997 19 H -0.001 1.001 20 H 0.047 0.953 21 H 0.055 0.945 22 H 0.057 0.943 23 H 0.058 0.942 24 H 0.107 0.893 25 H 0.099 0.901 26 H 0.096 0.904 27 H 0.098 0.902 28 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.533 -9.018 -1.337 16.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.704 3.296 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.556 4.556 8 H 0.101 0.899 9 C 0.092 3.908 10 O -0.293 6.293 11 C -0.019 4.019 12 C -0.007 4.007 13 O -0.261 6.261 14 C -0.041 4.041 15 C -0.231 4.231 16 C -0.222 4.222 17 H 0.076 0.924 18 H 0.020 0.980 19 H 0.017 0.983 20 H 0.065 0.935 21 H 0.073 0.927 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.124 0.876 25 H 0.117 0.883 26 H 0.114 0.886 27 H 0.116 0.884 28 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 13.136 -8.937 -1.475 15.956 hybrid contribution 0.675 1.042 0.151 1.251 sum 13.811 -7.895 -1.324 15.963 Atomic orbital electron populations 1.69877 1.06055 1.27056 1.50468 1.24775 0.94819 0.98750 0.94676 0.86833 0.80308 0.83719 0.78780 1.19914 1.20785 1.19123 1.20903 0.88283 0.95364 1.51047 0.89935 1.20615 0.96265 0.79555 0.94320 1.87984 1.16900 1.29387 1.95017 1.22355 0.85812 0.93801 0.99966 1.22620 0.97355 0.93689 0.87057 1.87993 1.79689 1.20003 1.38381 1.22618 1.02950 0.83696 0.94870 1.23376 0.98017 1.03339 0.98379 1.23318 0.94796 0.99905 1.04158 0.92382 0.97962 0.98315 0.93486 0.92685 0.92471 0.92344 0.87563 0.88278 0.88600 0.88408 0.87849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.16 13.96 55.43 0.77 -27.39 15 2 C 0.07 2.15 5.47 -17.82 -0.10 2.05 15 3 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 15 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 15 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 15 6 H -0.27 -6.31 6.54 56.52 0.37 -5.94 15 7 C -0.52 -15.91 9.99 -34.44 -0.34 -16.26 15 8 H 0.08 2.78 8.06 -52.49 -0.42 2.35 15 9 C 0.17 4.43 4.76 36.01 0.17 4.60 15 10 O -0.37 -9.23 10.29 -40.08 -0.41 -9.64 15 11 C 0.06 1.07 6.32 37.16 0.23 1.31 15 12 C 0.07 1.07 6.19 37.16 0.23 1.30 15 13 O -0.34 -5.99 10.56 -40.08 -0.42 -6.41 15 14 C 0.02 0.23 6.44 -26.73 -0.17 0.06 15 15 C -0.19 -2.20 10.48 -26.73 -0.28 -2.48 15 16 C -0.18 -2.27 10.48 -26.73 -0.28 -2.55 15 17 H 0.27 7.72 8.31 -40.82 -0.34 7.38 15 18 H 0.00 0.07 7.20 -51.93 -0.37 -0.30 15 19 H 0.00 -0.02 7.57 -51.93 -0.39 -0.41 15 20 H 0.05 0.84 8.14 -51.93 -0.42 0.41 15 21 H 0.06 0.88 8.14 -51.93 -0.42 0.46 15 22 H 0.06 0.68 8.14 -51.93 -0.42 0.25 15 23 H 0.06 0.87 8.14 -51.93 -0.42 0.45 15 24 H 0.11 1.14 7.93 -51.93 -0.41 0.73 15 25 H 0.10 1.19 8.14 -51.93 -0.42 0.77 15 26 H 0.10 0.85 8.14 -51.93 -0.42 0.43 15 27 H 0.10 0.97 8.14 -51.93 -0.42 0.55 15 28 H 0.10 1.43 8.14 -51.93 -0.42 1.01 15 LS Contribution 247.35 15.07 3.73 3.73 Total: -1.00 -33.43 247.35 -5.69 -39.12 By element: Atomic # 1 Polarization: -0.37 SS G_CDS: -4.15 Total: -4.52 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: -0.54 Total: -11.98 kcal Atomic # 7 Polarization: -28.16 SS G_CDS: 0.77 Total: -27.39 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.84 Total: -16.05 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -33.43 -5.69 -39.12 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712031352.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.211 kcal (2) G-P(sol) polarization free energy of solvation -33.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds