Wall clock time and date at job start Mon Mar 30 2020 02:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99938 * 2 1 4 4 H 1.48499 * 109.46897 * 270.00094 * 3 2 1 5 5 H 1.48500 * 109.47028 * 30.00102 * 3 2 1 6 6 H 1.48495 * 109.46818 * 149.99965 * 3 2 1 7 7 C 1.37883 * 119.99904 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99649 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99662 * 179.97438 * 7 2 1 10 10 O 1.42899 * 109.46785 * 180.02562 * 9 7 2 11 11 C 1.42905 * 113.99778 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46728 * 179.97438 * 11 10 9 13 13 O 1.42904 * 109.47221 * 65.00652 * 12 11 10 14 14 C 1.42898 * 113.99912 * 179.97438 * 13 12 11 15 15 C 1.53000 * 117.49899 * 218.61761 * 14 13 12 16 16 C 1.52997 * 60.00102 * 252.51073 * 15 14 13 17 17 H 0.96993 * 120.00083 * 359.97438 * 1 2 3 18 18 H 1.08997 * 109.47198 * 60.00162 * 9 7 2 19 19 H 1.08997 * 109.47040 * 300.00196 * 9 7 2 20 20 H 1.09000 * 109.47187 * 300.00233 * 11 10 9 21 21 H 1.09001 * 109.46558 * 60.00281 * 11 10 9 22 22 H 1.09000 * 109.46738 * 185.00163 * 12 11 10 23 23 H 1.08994 * 109.47465 * 305.00250 * 12 11 10 24 24 H 1.08995 * 115.55264 * 4.32491 * 14 13 12 25 25 H 1.09000 * 117.49576 * 0.02562 * 15 14 13 26 26 H 1.08998 * 117.50181 * 145.01779 * 15 14 13 27 27 H 1.08999 * 117.50182 * 252.50399 * 16 15 14 28 28 H 1.09003 * 117.51559 * 107.47812 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5466 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 8 3.9879 -2.5413 0.0001 11 6 5.4124 -2.6541 -0.0010 12 6 5.8069 -4.1324 -0.0002 13 8 5.3786 -4.7404 -1.2204 14 6 5.7003 -6.1290 -1.3221 15 6 6.1465 -6.6527 -2.6886 16 6 4.7621 -7.0130 -2.1462 17 1 -0.4850 0.8400 0.0004 18 1 3.8752 -0.6796 0.8894 19 1 3.8745 -0.6808 -0.8905 20 1 5.8145 -2.1709 -0.8915 21 1 5.8158 -2.1703 0.8885 22 1 6.8898 -4.2194 0.0886 23 1 5.3318 -4.6348 0.8424 24 1 6.1611 -6.5707 -0.4386 25 1 6.1951 -5.9378 -3.5101 26 1 6.9012 -7.4389 -2.7044 27 1 4.6058 -8.0364 -1.8051 28 1 3.8993 -6.5354 -2.6106 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712031352.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:40 Heat of formation + Delta-G solvation = -89.580172 kcal Electronic energy + Delta-G solvation = -11078.095471 eV Core-core repulsion = 8901.535971 eV Total energy + Delta-G solvation = -2176.559500 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.62523 -38.47991 -35.89823 -34.84412 -31.27919 -29.32045 -24.05833 -23.48456 -23.28087 -22.84911 -19.11778 -18.24944 -17.59573 -16.67487 -16.40238 -16.10229 -15.52847 -15.01268 -14.62569 -14.36253 -13.52082 -13.07997 -13.07883 -12.61092 -12.41951 -12.24146 -11.95586 -11.80895 -11.39309 -11.33141 -10.94644 -10.39753 -10.03382 -8.38999 -6.47744 1.32502 1.36491 1.47420 2.28759 2.57865 2.92446 2.93289 3.05959 3.90825 4.02464 4.08201 4.23419 4.31175 4.47385 4.56130 4.58430 4.68263 4.75565 4.83197 4.98395 5.02057 5.24712 5.41056 5.91002 6.35102 6.56298 6.73122 7.16809 8.78516 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.066027 B = 0.007486 C = 0.007033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.969094 B = 3739.219363 C = 3980.019305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.011 3.989 3 Si 0.961 3.039 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.242 1.242 7 C -0.551 4.551 8 H 0.026 0.974 9 C 0.178 3.822 10 O -0.408 6.408 11 C 0.045 3.955 12 C 0.071 3.929 13 O -0.385 6.385 14 C -0.003 4.003 15 C -0.177 4.177 16 C -0.197 4.197 17 H 0.274 0.726 18 H 0.019 0.981 19 H 0.009 0.991 20 H 0.052 0.948 21 H 0.083 0.917 22 H 0.102 0.898 23 H 0.057 0.943 24 H 0.135 0.865 25 H 0.087 0.913 26 H 0.129 0.871 27 H 0.123 0.877 28 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.241 -8.367 -1.047 18.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.187 4.187 3 Si 0.781 3.219 4 H -0.185 1.185 5 H -0.196 1.196 6 H -0.165 1.165 7 C -0.588 4.588 8 H 0.044 0.956 9 C 0.103 3.897 10 O -0.328 6.328 11 C -0.031 4.031 12 C -0.005 4.005 13 O -0.304 6.304 14 C -0.061 4.061 15 C -0.214 4.214 16 C -0.234 4.234 17 H 0.083 0.917 18 H 0.037 0.963 19 H 0.027 0.973 20 H 0.070 0.930 21 H 0.101 0.899 22 H 0.120 0.880 23 H 0.076 0.924 24 H 0.153 0.847 25 H 0.105 0.895 26 H 0.147 0.853 27 H 0.141 0.859 28 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 15.859 -8.317 -1.185 17.947 hybrid contribution -0.215 0.703 0.040 0.736 sum 15.644 -7.614 -1.145 17.437 Atomic orbital electron populations 1.70038 1.08350 1.28904 1.50924 1.25913 0.95881 1.03608 0.93263 0.85539 0.79501 0.77059 0.79796 1.18515 1.19567 1.16535 1.21189 0.91112 0.93826 1.52700 0.95595 1.20343 0.93278 0.80928 0.95198 1.87931 1.21183 1.28375 1.95288 1.22800 0.82301 0.96551 1.01478 1.22718 0.99785 0.91589 0.86439 1.87925 1.80732 1.22405 1.39357 1.23023 1.04025 0.82092 0.96930 1.23444 0.97869 1.03345 0.96729 1.23397 0.94536 1.00905 1.04536 0.91701 0.96335 0.97331 0.93013 0.89905 0.88041 0.92436 0.84745 0.89462 0.85330 0.85902 0.90550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.71 13.96 21.45 0.30 -60.41 15 2 C 0.01 0.68 5.47 84.66 0.46 1.14 15 3 Si 0.96 44.10 27.47 68.60 1.88 45.98 15 4 H -0.26 -11.39 7.11 99.48 0.71 -10.68 15 5 H -0.27 -11.86 7.11 99.48 0.71 -11.15 15 6 H -0.24 -10.11 6.54 99.48 0.65 -9.46 15 7 C -0.55 -34.95 9.99 25.60 0.26 -34.70 15 8 H 0.03 1.86 8.06 -2.91 -0.02 1.83 15 9 C 0.18 9.32 4.76 71.24 0.34 9.66 15 10 O -0.41 -20.26 10.29 -144.35 -1.49 -21.74 15 11 C 0.05 1.58 6.32 71.98 0.45 2.04 15 12 C 0.07 2.04 6.19 71.98 0.45 2.48 15 13 O -0.38 -13.22 10.56 -144.35 -1.52 -14.74 15 14 C 0.00 -0.08 6.44 30.59 0.20 0.12 15 15 C -0.18 -3.67 10.48 30.59 0.32 -3.35 15 16 C -0.20 -4.70 10.48 30.59 0.32 -4.38 15 17 H 0.27 16.08 8.31 -92.71 -0.77 15.31 15 18 H 0.02 0.92 7.20 -2.39 -0.02 0.90 15 19 H 0.01 0.45 7.57 -2.39 -0.02 0.43 15 20 H 0.05 1.74 8.14 -2.39 -0.02 1.73 15 21 H 0.08 2.41 8.14 -2.39 -0.02 2.39 15 22 H 0.10 2.02 8.14 -2.39 -0.02 2.00 15 23 H 0.06 1.64 8.14 -2.39 -0.02 1.62 15 24 H 0.14 2.50 7.93 -2.39 -0.02 2.49 15 25 H 0.09 2.01 8.14 -2.39 -0.02 1.99 15 26 H 0.13 1.82 8.14 -2.39 -0.02 1.80 15 27 H 0.12 2.24 8.14 -2.39 -0.02 2.22 15 28 H 0.08 2.21 8.14 -2.39 -0.02 2.19 15 Total: -1.00 -75.32 247.35 3.03 -72.29 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: 1.06 Total: 5.61 kcal Atomic # 6 Polarization: -29.78 SS G_CDS: 2.80 Total: -26.98 kcal Atomic # 7 Polarization: -60.71 SS G_CDS: 0.30 Total: -60.41 kcal Atomic # 8 Polarization: -33.47 SS G_CDS: -3.01 Total: -36.48 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.88 Total: 45.98 kcal Total: -75.32 3.03 -72.29 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712031352.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.288 kcal (2) G-P(sol) polarization free energy of solvation -75.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds