Wall clock time and date at job start Mon Mar 30 2020 01:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31326 * 1 3 3 Si 1.86795 * 120.00165 * 2 1 4 4 H 1.48499 * 109.47432 * 84.01546 * 3 2 1 5 5 H 1.48504 * 109.46861 * 204.01517 * 3 2 1 6 6 H 1.48504 * 109.47307 * 324.01061 * 3 2 1 7 7 C 1.39399 * 119.99483 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00133 * 18.64851 * 7 2 1 9 9 C 1.40937 * 119.99867 * 198.64034 * 7 2 1 10 10 C 1.44510 * 123.69518 * 22.58401 * 9 7 2 11 11 C 1.32398 * 114.41023 * 179.97438 * 10 9 7 12 12 S 1.75481 * 111.33423 * 359.97438 * 11 10 9 13 13 C 1.38976 * 123.69734 * 202.28327 * 9 7 2 14 14 S 1.76199 * 125.21684 * 0.03458 * 13 9 7 15 15 H 0.96999 * 120.00606 * 173.58282 * 1 2 3 16 16 H 1.07994 * 122.79348 * 359.93694 * 10 9 7 17 17 H 1.07998 * 124.33257 * 179.97438 * 11 10 9 18 18 H 1.41002 * 99.99740 * 89.99995 * 14 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3133 0.0000 0.0000 3 14 2.2473 1.6177 0.0000 4 1 2.3684 2.1194 1.3924 5 1 3.6023 1.4068 -0.5698 6 1 1.5138 2.6128 -0.8227 7 6 2.0101 -1.2073 0.0005 8 1 1.5126 -2.1182 -0.2981 9 6 3.3641 -1.2392 0.3907 10 6 3.9813 -0.2353 1.2271 11 6 5.2635 -0.4468 1.4800 12 16 5.8334 -1.9146 0.7054 13 6 4.2504 -2.2428 0.0181 14 16 3.8486 -3.6300 -0.9912 15 1 -0.4851 -0.8347 -0.0939 16 1 3.4417 0.6168 1.6131 17 1 5.8798 0.2011 2.0856 18 1 4.1372 -3.0979 -2.2647 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716266110.mol2 18 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:24 Heat of formation + Delta-G solvation = 13.406134 kcal Electronic energy + Delta-G solvation = -7452.258184 eV Core-core repulsion = 5894.004059 eV Total energy + Delta-G solvation = -1558.254125 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 185.987 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -36.49190 -33.27615 -29.02248 -25.71366 -21.58869 -19.57351 -18.02558 -16.24557 -15.26708 -14.87579 -13.58086 -13.29775 -12.48796 -12.03716 -11.71711 -11.33013 -10.93434 -10.20502 -10.04527 -9.99576 -9.41595 -9.25832 -7.79616 -7.52431 -7.28432 -6.91887 -4.67081 1.94963 2.75758 2.97094 3.14339 3.19316 3.36456 3.49690 3.66501 3.84158 4.00447 5.00009 5.77071 6.20778 6.89211 6.97521 7.35282 7.42206 8.07881 8.27660 8.57692 9.79059 Molecular weight = 185.99amu Principal moments of inertia in cm(-1) A = 0.043830 B = 0.019935 C = 0.014584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.671612 B = 1404.238931 C = 1919.406415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.039 3.961 3 Si 1.067 2.933 4 H -0.273 1.273 5 H -0.261 1.261 6 H -0.283 1.283 7 C -0.460 4.460 8 H 0.096 0.904 9 C 0.113 3.887 10 C -0.168 4.168 11 C -0.180 4.180 12 S -0.004 6.004 13 C -0.388 4.388 14 S -0.095 6.095 15 H 0.292 0.708 16 H 0.125 0.875 17 H 0.144 0.856 18 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.211 1.439 0.884 5.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.183 4.183 3 Si 0.893 3.107 4 H -0.200 1.200 5 H -0.185 1.185 6 H -0.210 1.210 7 C -0.492 4.492 8 H 0.114 0.886 9 C 0.101 3.899 10 C -0.203 4.203 11 C -0.316 4.316 12 S 0.252 5.748 13 C -0.617 4.617 14 S 0.059 5.941 15 H 0.103 0.897 16 H 0.143 0.857 17 H 0.162 0.838 18 H 0.000 1.000 Dipole moment (debyes) X Y Z Total from point charges 6.008 1.416 0.535 6.196 hybrid contribution -0.839 0.261 -0.147 0.891 sum 5.169 1.678 0.387 5.448 Atomic orbital electron populations 1.70687 1.07790 1.33757 1.29799 1.27377 0.95781 1.04637 0.90510 0.83743 0.76044 0.73023 0.77918 1.19998 1.18520 1.21027 1.20468 0.94153 0.97482 1.37068 0.88647 1.18283 0.93081 0.89170 0.89394 1.21379 0.95057 1.01338 1.02500 1.24949 0.99063 1.01628 1.05982 1.83191 1.15965 1.21309 1.54334 1.23896 0.96846 1.13373 1.27538 1.85578 1.87977 1.17437 1.03064 0.89677 0.85730 0.83839 0.99997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.54 13.68 55.52 0.76 -19.78 13 2 C 0.04 0.98 5.47 -17.34 -0.09 0.89 13 3 Si 1.07 22.75 24.85 -169.99 -4.22 18.53 13 4 H -0.27 -5.40 6.70 56.52 0.38 -5.02 13 5 H -0.26 -5.57 6.60 56.52 0.37 -5.20 13 6 H -0.28 -5.87 7.11 56.52 0.40 -5.47 13 7 C -0.46 -12.18 9.23 -38.13 -0.35 -12.54 13 8 H 0.10 2.65 7.73 -52.49 -0.41 2.25 13 9 C 0.11 2.90 5.31 -106.13 -0.56 2.34 13 10 C -0.17 -3.83 7.50 -39.04 -0.29 -4.13 13 11 C -0.18 -3.71 11.05 28.81 0.32 -3.39 13 12 S 0.00 -0.08 23.24 -107.50 -2.50 -2.58 13 13 C -0.39 -9.68 6.91 31.01 0.21 -9.46 13 14 S -0.09 -2.17 25.49 -107.50 -2.74 -4.91 13 15 H 0.29 7.32 8.73 -40.82 -0.36 6.96 13 16 H 0.13 2.67 4.39 -52.49 -0.23 2.44 13 17 H 0.14 2.39 8.06 -52.49 -0.42 1.96 13 18 H 0.03 0.77 9.55 96.90 0.93 1.69 13 LS Contribution 191.59 15.07 2.89 2.89 Total: -1.00 -26.60 191.59 -5.92 -32.53 By element: Atomic # 1 Polarization: -1.04 SS G_CDS: 0.66 Total: -0.38 kcal Atomic # 6 Polarization: -25.52 SS G_CDS: -0.77 Total: -26.29 kcal Atomic # 7 Polarization: -20.54 SS G_CDS: 0.76 Total: -19.78 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -4.22 Total: 18.53 kcal Atomic # 16 Polarization: -2.26 SS G_CDS: -5.24 Total: -7.50 kcal Total LS contribution 2.89 Total: 2.89 kcal Total: -26.60 -5.92 -32.53 kcal The number of atoms in the molecule is 18 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716266110.mol2 18 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.931 kcal (2) G-P(sol) polarization free energy of solvation -26.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds