Wall clock time and date at job start Mon Mar 30 2020 01:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31326 * 1 3 3 Si 1.86795 * 120.00165 * 2 1 4 4 H 1.48499 * 109.47432 * 84.01546 * 3 2 1 5 5 H 1.48504 * 109.46861 * 204.01517 * 3 2 1 6 6 H 1.48504 * 109.47307 * 324.01061 * 3 2 1 7 7 C 1.39399 * 119.99483 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00133 * 18.64851 * 7 2 1 9 9 C 1.40937 * 119.99867 * 198.64034 * 7 2 1 10 10 C 1.44510 * 123.69518 * 22.58401 * 9 7 2 11 11 C 1.32398 * 114.41023 * 179.97438 * 10 9 7 12 12 S 1.75481 * 111.33423 * 359.97438 * 11 10 9 13 13 C 1.38976 * 123.69734 * 202.28327 * 9 7 2 14 14 S 1.76199 * 125.21684 * 0.03458 * 13 9 7 15 15 H 0.96999 * 120.00606 * 173.58282 * 1 2 3 16 16 H 1.07994 * 122.79348 * 359.93694 * 10 9 7 17 17 H 1.07998 * 124.33257 * 179.97438 * 11 10 9 18 18 H 1.41002 * 99.99740 * 89.99995 * 14 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3133 0.0000 0.0000 3 14 2.2473 1.6177 0.0000 4 1 2.3684 2.1194 1.3924 5 1 3.6023 1.4068 -0.5698 6 1 1.5138 2.6128 -0.8227 7 6 2.0101 -1.2073 0.0005 8 1 1.5126 -2.1182 -0.2981 9 6 3.3641 -1.2392 0.3907 10 6 3.9813 -0.2353 1.2271 11 6 5.2635 -0.4468 1.4800 12 16 5.8334 -1.9146 0.7054 13 6 4.2504 -2.2428 0.0181 14 16 3.8486 -3.6300 -0.9912 15 1 -0.4851 -0.8347 -0.0939 16 1 3.4417 0.6168 1.6131 17 1 5.8798 0.2011 2.0856 18 1 4.1372 -3.0979 -2.2647 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716266110.mol2 18 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:24 Heat of formation + Delta-G solvation = -3.075116 kcal Electronic energy + Delta-G solvation = -7452.972865 eV Core-core repulsion = 5894.004059 eV Total energy + Delta-G solvation = -1558.968806 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 185.987 amu Computer time = 0.05 seconds Orbital eigenvalues (eV) -38.30738 -35.14931 -30.83182 -27.61988 -23.34087 -21.44301 -19.86281 -18.05045 -17.11096 -16.59680 -15.32681 -15.13907 -14.27904 -13.84609 -13.46719 -13.06949 -12.67856 -11.96236 -11.87663 -11.73258 -11.18746 -11.05094 -9.69079 -9.37629 -9.10018 -8.75686 -6.63534 0.16939 1.01410 1.28515 1.38928 1.48561 1.64250 1.72730 1.85995 2.13233 2.15340 3.06757 4.24226 4.51701 5.15759 5.20387 5.40191 5.52501 6.12978 6.26961 6.66759 7.84167 Molecular weight = 185.99amu Principal moments of inertia in cm(-1) A = 0.043830 B = 0.019935 C = 0.014584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.671612 B = 1404.238931 C = 1919.406415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.011 3.989 3 Si 1.099 2.901 4 H -0.242 1.242 5 H -0.260 1.260 6 H -0.277 1.277 7 C -0.491 4.491 8 H 0.063 0.937 9 C 0.098 3.902 10 C -0.197 4.197 11 C -0.157 4.157 12 S 0.031 5.969 13 C -0.421 4.421 14 S -0.095 6.095 15 H 0.283 0.717 16 H 0.140 0.860 17 H 0.193 0.807 18 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.125 2.710 1.718 7.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.206 4.206 3 Si 0.918 3.082 4 H -0.167 1.167 5 H -0.185 1.185 6 H -0.204 1.204 7 C -0.524 4.524 8 H 0.082 0.918 9 C 0.085 3.915 10 C -0.231 4.231 11 C -0.294 4.294 12 S 0.287 5.713 13 C -0.648 4.648 14 S 0.059 5.941 15 H 0.094 0.906 16 H 0.158 0.842 17 H 0.210 0.790 18 H 0.007 0.993 Dipole moment (debyes) X Y Z Total from point charges 7.919 2.663 1.383 8.469 hybrid contribution -1.317 -0.276 -0.430 1.413 sum 6.602 2.387 0.953 7.085 Atomic orbital electron populations 1.70757 1.08342 1.33244 1.31879 1.28512 0.95806 1.07014 0.89225 0.83383 0.74956 0.70077 0.79772 1.16697 1.18477 1.20391 1.20402 0.95288 0.97080 1.39579 0.91840 1.18602 0.92871 0.90459 0.89575 1.21438 0.96163 1.01923 1.03621 1.25504 0.98598 1.00922 1.04331 1.83018 1.13150 1.21708 1.53374 1.24493 0.99096 1.13325 1.27923 1.85472 1.88525 1.16888 1.03212 0.90596 0.84237 0.78984 0.99268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.95 13.68 21.75 0.30 -42.65 13 2 C 0.01 0.57 5.47 85.05 0.46 1.03 13 3 Si 1.10 44.14 24.85 68.60 1.70 45.85 13 4 H -0.24 -8.50 6.70 99.48 0.67 -7.84 13 5 H -0.26 -10.37 6.60 99.48 0.66 -9.72 13 6 H -0.28 -10.78 7.11 99.48 0.71 -10.07 13 7 C -0.49 -26.55 9.23 23.21 0.21 -26.33 13 8 H 0.06 3.71 7.73 -2.91 -0.02 3.69 13 9 C 0.10 4.94 5.31 -20.84 -0.11 4.83 13 10 C -0.20 -8.44 7.50 22.76 0.17 -8.27 13 11 C -0.16 -5.78 11.05 66.71 0.74 -5.05 13 12 S 0.03 1.24 23.24 -56.49 -1.31 -0.07 13 13 C -0.42 -20.46 6.91 68.00 0.47 -19.99 13 14 S -0.09 -4.33 25.49 -56.49 -1.44 -5.77 13 15 H 0.28 14.82 8.73 -92.71 -0.81 14.01 13 16 H 0.14 5.50 4.39 -2.91 -0.01 5.48 13 17 H 0.19 5.14 8.06 -2.91 -0.02 5.11 13 18 H 0.04 1.85 9.55 73.80 0.70 2.56 13 Total: -1.00 -56.27 191.59 3.06 -53.21 By element: Atomic # 1 Polarization: 1.37 SS G_CDS: 1.87 Total: 3.23 kcal Atomic # 6 Polarization: -55.73 SS G_CDS: 1.95 Total: -53.78 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: 0.30 Total: -42.65 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.70 Total: 45.85 kcal Atomic # 16 Polarization: -3.09 SS G_CDS: -2.75 Total: -5.85 kcal Total: -56.27 3.06 -53.21 kcal The number of atoms in the molecule is 18 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716266110.mol2 18 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.130 kcal (2) G-P(sol) polarization free energy of solvation -56.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.05 seconds