Wall clock time and date at job start Mon Mar 30 2020 01:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31054 * 1 3 3 Si 1.86800 * 119.99798 * 2 1 4 4 H 1.48493 * 109.46964 * 240.00168 * 3 2 1 5 5 H 1.48501 * 109.46823 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.46914 * 120.00130 * 3 2 1 7 7 C 1.39901 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99708 * 179.97438 * 7 2 1 9 9 C 1.39645 * 120.00211 * 0.02562 * 7 2 1 10 10 S 1.75867 * 125.44322 * 359.97438 * 9 7 2 11 11 C 1.75733 * 91.27707 * 180.02562 * 10 9 7 12 12 C 1.33881 * 110.46655 * 359.76608 * 11 10 9 13 13 C 1.37843 * 115.35787 * 0.42246 * 12 11 10 14 14 S 1.76207 * 123.10554 * 179.83229 * 13 12 11 15 15 H 0.96999 * 120.00637 * 0.02562 * 1 2 3 16 16 H 1.07998 * 124.76723 * 179.97438 * 11 10 9 17 17 H 1.07997 * 122.32318 * 180.21879 * 12 11 10 18 18 H 1.34505 * 102.99714 * 269.70476 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3105 0.0000 0.0000 3 14 2.2445 1.6178 0.0000 4 1 3.0981 1.6964 -1.2125 5 1 1.2794 2.7464 -0.0006 6 1 3.0982 1.6964 1.2125 7 6 2.0100 -1.2116 -0.0005 8 1 3.0900 -1.2115 -0.0010 9 6 1.3119 -2.4210 -0.0016 10 16 -0.4389 -2.5879 -0.0018 11 6 -0.3111 -4.3405 -0.0026 12 6 0.9739 -4.7163 -0.0078 13 6 1.8901 -3.6864 -0.0021 14 16 3.6325 -3.9484 -0.0031 15 1 -0.4851 0.8400 -0.0004 16 1 -1.1512 -5.0192 -0.0025 17 1 1.2720 -5.7543 -0.0126 18 1 3.9324 -3.9936 1.3073 RHF calculation, no. of doubly occupied orbitals= 27 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716269671.mol2 18 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:26 Heat of formation + Delta-G solvation = -12.510692 kcal Electronic energy + Delta-G solvation = -7395.775081 eV Core-core repulsion = 5836.397118 eV Total energy + Delta-G solvation = -1559.377963 eV No. of doubly occupied orbitals = 27 Molecular weight (most abundant/longest-lived isotopes) = 185.987 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -37.69724 -35.83292 -31.12650 -27.03495 -23.99990 -20.29977 -20.08307 -17.93640 -17.00404 -16.48850 -15.63216 -14.27980 -14.03136 -13.93148 -13.33751 -13.17597 -12.77394 -12.04784 -11.95040 -11.57090 -11.33053 -10.88753 -9.52045 -8.94031 -8.77704 -8.66796 -6.66841 0.67896 1.10522 1.37522 1.53492 1.54290 1.60368 1.96764 2.14699 2.24612 2.60288 3.03467 4.72423 4.87797 4.92681 5.48819 5.75956 5.98793 6.06941 6.40817 6.49459 7.91492 Molecular weight = 185.99amu Principal moments of inertia in cm(-1) A = 0.043289 B = 0.018904 C = 0.013254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.659772 B = 1480.805237 C = 2112.025681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.014 3.986 3 Si 1.012 2.988 4 H -0.252 1.252 5 H -0.257 1.257 6 H -0.256 1.256 7 C -0.384 4.384 8 H 0.110 0.890 9 C 0.038 3.962 10 S 0.110 5.890 11 C -0.405 4.405 12 C -0.048 4.048 13 C -0.376 4.376 14 S -0.107 6.107 15 H 0.313 0.687 16 H 0.143 0.857 17 H 0.116 0.884 18 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.195 3.120 0.094 3.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.207 4.207 3 Si 0.829 3.171 4 H -0.176 1.176 5 H -0.180 1.180 6 H -0.180 1.180 7 C -0.419 4.419 8 H 0.128 0.872 9 C -0.085 4.085 10 S 0.366 5.634 11 C -0.540 4.540 12 C -0.078 4.078 13 C -0.494 4.494 14 S 0.047 5.953 15 H 0.127 0.873 16 H 0.161 0.839 17 H 0.134 0.866 18 H -0.020 1.020 Dipole moment (debyes) X Y Z Total from point charges 0.657 3.967 -0.126 4.023 hybrid contribution 0.343 -0.664 1.101 1.331 sum 1.000 3.303 0.975 3.586 Atomic orbital electron populations 1.68987 1.09043 1.32966 1.30140 1.27370 0.95936 1.06035 0.91368 0.84746 0.78492 0.73120 0.80699 1.17612 1.18032 1.18030 1.19792 0.96906 0.89299 1.35859 0.87196 1.22450 0.95776 0.96014 0.94308 1.84336 1.04348 0.97292 1.77464 1.25496 0.99336 1.02002 1.27187 1.19658 0.92213 0.97912 0.98015 1.19987 0.94105 0.94055 1.41293 1.84534 1.06124 1.95995 1.08599 0.87323 0.83888 0.86612 1.02049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -36.29 10.65 21.84 0.23 -36.06 13 2 C 0.01 0.62 5.50 85.21 0.47 1.09 13 3 Si 1.01 33.61 29.56 68.60 2.03 35.63 13 4 H -0.25 -8.20 7.11 99.48 0.71 -7.49 13 5 H -0.26 -7.81 7.11 99.48 0.71 -7.10 13 6 H -0.26 -8.37 7.11 99.48 0.71 -7.66 13 7 C -0.38 -19.41 8.96 23.01 0.21 -19.20 13 8 H 0.11 5.38 7.26 -2.91 -0.02 5.36 13 9 C 0.04 2.04 6.21 22.82 0.14 2.18 13 10 S 0.11 5.53 20.24 -56.49 -1.14 4.38 13 11 C -0.40 -19.52 11.18 66.83 0.75 -18.77 13 12 C -0.05 -2.35 9.99 21.18 0.21 -2.14 13 13 C -0.38 -19.63 6.18 22.39 0.14 -19.50 13 14 S -0.11 -4.91 25.10 -56.49 -1.42 -6.33 13 15 H 0.31 12.69 8.30 -92.71 -0.77 11.92 13 16 H 0.14 6.10 8.06 -2.91 -0.02 6.08 13 17 H 0.12 5.17 8.06 -2.91 -0.02 5.14 13 18 H 0.01 0.64 9.07 73.35 0.67 1.30 13 Total: -1.00 -54.71 195.65 3.56 -51.15 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: 1.95 Total: 7.55 kcal Atomic # 6 Polarization: -58.25 SS G_CDS: 1.91 Total: -56.33 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: 0.23 Total: -36.06 kcal Atomic # 14 Polarization: 33.61 SS G_CDS: 2.03 Total: 35.63 kcal Atomic # 16 Polarization: 0.62 SS G_CDS: -2.56 Total: -1.94 kcal Total: -54.71 3.56 -51.15 kcal The number of atoms in the molecule is 18 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716269671.mol2 18 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.643 kcal (2) G-P(sol) polarization free energy of solvation -54.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds