Wall clock time and date at job start Mon Mar 30 2020 01:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99827 * 2 1 4 4 H 1.48497 * 109.47245 * 270.00045 * 3 2 1 5 5 H 1.48501 * 109.47165 * 30.00313 * 3 2 1 6 6 H 1.48506 * 109.46920 * 150.00180 * 3 2 1 7 7 C 1.37878 * 120.00223 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99674 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00092 * 179.97438 * 7 2 1 10 10 H 1.08998 * 109.47518 * 59.99889 * 9 7 2 11 11 O 1.42900 * 109.47277 * 299.99566 * 9 7 2 12 12 C 1.53006 * 109.47086 * 179.97438 * 9 7 2 13 13 C 1.53732 * 110.68490 * 177.64569 * 12 9 7 14 14 N 1.44985 * 110.91142 * 241.64788 * 13 12 9 15 15 C 1.27435 * 120.15572 * 359.82618 * 14 13 12 16 16 S 1.76765 * 110.05300 * 0.10473 * 15 14 13 17 17 H 0.96998 * 119.99900 * 0.02562 * 1 2 3 18 18 H 0.96699 * 113.99896 * 300.00412 * 11 9 7 19 19 H 1.08999 * 110.60643 * 300.69584 * 12 9 7 20 20 H 1.08996 * 109.15836 * 2.02977 * 13 12 9 21 21 H 1.08999 * 109.15280 * 121.15039 * 13 12 9 22 22 H 1.08000 * 124.97455 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 1 3.8752 -0.6804 0.8888 11 8 3.9874 -0.5202 -1.1680 12 6 4.0216 -2.6365 -0.0010 13 6 5.5574 -2.6695 -0.0607 14 7 6.0143 -3.3401 -1.2621 15 6 5.1703 -3.8086 -2.0941 16 16 3.5248 -3.4952 -1.5297 17 1 -0.4850 0.8400 -0.0004 18 1 3.7017 -0.9236 -1.9991 19 1 3.6587 -3.1716 0.8766 20 1 5.9376 -1.6481 -0.0533 21 1 5.9380 -3.1974 0.8137 22 1 5.4234 -4.3210 -3.0106 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725542750.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:33 Heat of formation + Delta-G solvation = -26.747316 kcal Electronic energy + Delta-G solvation = -9762.186010 eV Core-core repulsion = 7829.845013 eV Total energy + Delta-G solvation = -1932.340997 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 187.041 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -37.87710 -35.75990 -32.34037 -30.86761 -27.31783 -24.41190 -21.40530 -20.32275 -17.33637 -17.24462 -15.56633 -15.01696 -14.35296 -14.03225 -13.54843 -13.12326 -12.74455 -11.82735 -11.61467 -11.02763 -10.90959 -10.68008 -10.36085 -9.96206 -9.45811 -8.85952 -8.71035 -8.64809 -7.36789 -6.18960 -4.31510 2.04988 2.16676 2.66171 3.39522 3.43934 3.54629 4.43334 4.48436 4.92047 5.12106 5.28168 5.68548 5.77983 5.95132 6.11335 6.18519 7.01401 7.41520 7.74082 8.19809 8.70183 8.88023 9.42188 10.91162 Molecular weight = 187.04amu Principal moments of inertia in cm(-1) A = 0.064766 B = 0.015077 C = 0.013524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.224852 B = 1856.711943 C = 2069.857179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.085 3.915 3 Si 0.913 3.087 4 H -0.277 1.277 5 H -0.304 1.304 6 H -0.269 1.269 7 C -0.558 4.558 8 H 0.078 0.922 9 C 0.206 3.794 10 H 0.076 0.924 11 O -0.583 6.583 12 C -0.093 4.093 13 C 0.034 3.966 14 N -0.526 5.526 15 C 0.156 3.844 16 S -0.186 6.186 17 H 0.266 0.734 18 H 0.367 0.633 19 H 0.111 0.889 20 H 0.107 0.893 21 H 0.092 0.908 22 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.398 -4.903 -1.926 9.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.120 4.120 3 Si 0.743 3.257 4 H -0.203 1.203 5 H -0.232 1.232 6 H -0.194 1.194 7 C -0.596 4.596 8 H 0.096 0.904 9 C 0.147 3.853 10 H 0.093 0.907 11 O -0.391 6.391 12 C -0.224 4.224 13 C -0.098 4.098 14 N -0.238 5.238 15 C -0.165 4.165 16 S 0.042 5.958 17 H 0.076 0.924 18 H 0.216 0.784 19 H 0.129 0.871 20 H 0.125 0.875 21 H 0.110 0.890 22 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 8.360 -4.583 -1.735 9.690 hybrid contribution 0.327 0.730 0.230 0.832 sum 8.687 -3.853 -1.505 9.621 Atomic orbital electron populations 1.69946 1.06607 1.27558 1.48275 1.24988 0.94702 0.99826 0.92522 0.86262 0.79058 0.81769 0.78636 1.20306 1.23235 1.19428 1.21428 0.88994 0.95135 1.54032 0.90403 1.19943 0.94691 0.84352 0.86341 0.90694 1.86340 1.77545 1.58199 1.17004 1.25493 0.96542 1.03339 0.97044 1.23130 0.92252 1.01501 0.92924 1.70003 1.37349 1.11975 1.04486 1.28880 0.91730 0.96009 0.99911 1.87096 1.12481 1.68753 1.27451 0.92392 0.78443 0.87104 0.87494 0.88986 0.79013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.64 13.96 55.43 0.77 -25.87 14 2 C 0.08 2.40 5.47 -17.82 -0.10 2.31 14 3 Si 0.91 22.82 26.18 -169.99 -4.45 18.37 14 4 H -0.28 -6.99 7.11 56.52 0.40 -6.59 14 5 H -0.30 -7.56 7.11 56.52 0.40 -7.16 14 6 H -0.27 -6.58 6.54 56.52 0.37 -6.21 14 7 C -0.56 -15.10 8.80 -34.44 -0.30 -15.40 14 8 H 0.08 2.29 7.83 -52.49 -0.41 1.88 14 9 C 0.21 4.67 1.98 -27.88 -0.06 4.62 14 10 H 0.08 1.72 7.20 -51.93 -0.37 1.35 14 11 O -0.58 -13.27 10.37 -35.23 -0.37 -13.63 14 12 C -0.09 -1.77 3.22 -26.35 -0.08 -1.86 14 13 C 0.03 0.58 7.02 -4.47 -0.03 0.55 14 14 N -0.53 -8.68 10.82 -62.58 -0.68 -9.36 14 15 C 0.16 2.32 12.50 50.94 0.64 2.95 14 16 S -0.19 -3.39 20.80 -107.50 -2.24 -5.63 14 17 H 0.27 7.52 8.31 -40.82 -0.34 7.18 14 18 H 0.37 7.95 7.78 45.56 0.35 8.31 14 19 H 0.11 2.06 8.14 -51.93 -0.42 1.64 14 20 H 0.11 1.88 7.36 -51.93 -0.38 1.49 14 21 H 0.09 1.35 8.14 -51.93 -0.42 0.93 14 22 H 0.19 2.04 8.06 -52.49 -0.42 1.62 14 LS Contribution 204.71 15.07 3.08 3.08 Total: -1.00 -30.37 204.71 -5.05 -35.43 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -1.25 Total: 4.43 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: 0.06 Total: -6.84 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 0.10 Total: -35.22 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -0.37 Total: -13.63 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -4.45 Total: 18.37 kcal Atomic # 16 Polarization: -3.39 SS G_CDS: -2.24 Total: -5.63 kcal Total LS contribution 3.08 Total: 3.08 kcal Total: -30.37 -5.05 -35.43 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725542750.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.680 kcal (2) G-P(sol) polarization free energy of solvation -30.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds