Wall clock time and date at job start Mon Mar 30 2020 01:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99827 * 2 1 4 4 H 1.48497 * 109.47245 * 270.00045 * 3 2 1 5 5 H 1.48501 * 109.47165 * 30.00313 * 3 2 1 6 6 H 1.48506 * 109.46920 * 150.00180 * 3 2 1 7 7 C 1.37878 * 120.00223 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99674 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00092 * 179.97438 * 7 2 1 10 10 H 1.08998 * 109.47518 * 59.99889 * 9 7 2 11 11 O 1.42900 * 109.47277 * 299.99566 * 9 7 2 12 12 C 1.53006 * 109.47086 * 179.97438 * 9 7 2 13 13 C 1.53732 * 110.68490 * 177.64569 * 12 9 7 14 14 N 1.44985 * 110.91142 * 241.64788 * 13 12 9 15 15 C 1.27435 * 120.15572 * 359.82618 * 14 13 12 16 16 S 1.76765 * 110.05300 * 0.10473 * 15 14 13 17 17 H 0.96998 * 119.99900 * 0.02562 * 1 2 3 18 18 H 0.96699 * 113.99896 * 300.00412 * 11 9 7 19 19 H 1.08999 * 110.60643 * 300.69584 * 12 9 7 20 20 H 1.08996 * 109.15836 * 2.02977 * 13 12 9 21 21 H 1.08999 * 109.15280 * 121.15039 * 13 12 9 22 22 H 1.08000 * 124.97455 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 1 3.8752 -0.6804 0.8888 11 8 3.9874 -0.5202 -1.1680 12 6 4.0216 -2.6365 -0.0010 13 6 5.5574 -2.6695 -0.0607 14 7 6.0143 -3.3401 -1.2621 15 6 5.1703 -3.8086 -2.0941 16 16 3.5248 -3.4952 -1.5297 17 1 -0.4850 0.8400 -0.0004 18 1 3.7017 -0.9236 -1.9991 19 1 3.6587 -3.1716 0.8766 20 1 5.9376 -1.6481 -0.0533 21 1 5.9380 -3.1974 0.8137 22 1 5.4234 -4.3210 -3.0106 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725542750.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:33 Heat of formation + Delta-G solvation = -51.630147 kcal Electronic energy + Delta-G solvation = -9763.265010 eV Core-core repulsion = 7829.845013 eV Total energy + Delta-G solvation = -1933.419997 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 187.041 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.38183 -37.38942 -34.47283 -32.44847 -29.10526 -26.01873 -23.14383 -21.75277 -19.28769 -18.68919 -17.19301 -16.98497 -15.84477 -15.72420 -15.23067 -14.65374 -14.44823 -13.63603 -13.28611 -12.87367 -12.83096 -12.05507 -11.97796 -11.74830 -11.39208 -10.89225 -10.57423 -10.18003 -8.82205 -8.36938 -6.51837 0.67551 0.95452 1.27574 1.40103 1.43368 1.55871 2.35630 2.97165 3.32538 3.50194 3.78629 3.92470 4.42579 4.55894 4.74859 4.87334 5.18509 5.38063 6.04432 6.48006 6.58986 6.96509 7.25561 8.77129 Molecular weight = 187.04amu Principal moments of inertia in cm(-1) A = 0.064766 B = 0.015077 C = 0.013524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.224852 B = 1856.711943 C = 2069.857179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.032 3.968 3 Si 0.972 3.028 4 H -0.278 1.278 5 H -0.303 1.303 6 H -0.257 1.257 7 C -0.553 4.553 8 H 0.043 0.957 9 C 0.210 3.790 10 H 0.078 0.922 11 O -0.583 6.583 12 C -0.089 4.089 13 C 0.041 3.959 14 N -0.535 5.535 15 C 0.182 3.818 16 S -0.234 6.234 17 H 0.268 0.732 18 H 0.371 0.629 19 H 0.111 0.889 20 H 0.102 0.898 21 H 0.115 0.885 22 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.475 -5.030 -2.359 11.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.168 4.168 3 Si 0.800 3.200 4 H -0.204 1.204 5 H -0.231 1.231 6 H -0.181 1.181 7 C -0.591 4.591 8 H 0.061 0.939 9 C 0.151 3.849 10 H 0.095 0.905 11 O -0.391 6.391 12 C -0.220 4.220 13 C -0.092 4.092 14 N -0.246 5.246 15 C -0.138 4.138 16 S -0.006 6.006 17 H 0.077 0.923 18 H 0.221 0.779 19 H 0.129 0.871 20 H 0.120 0.880 21 H 0.133 0.867 22 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 10.458 -4.719 -2.163 11.675 hybrid contribution -0.316 0.667 0.318 0.804 sum 10.142 -4.052 -1.845 11.076 Atomic orbital electron populations 1.70063 1.08250 1.28421 1.50621 1.25777 0.95270 1.03180 0.92582 0.85325 0.78233 0.77990 0.78488 1.20425 1.23086 1.18113 1.21684 0.91457 0.93531 1.52459 0.93888 1.19766 0.91856 0.86950 0.86372 0.90469 1.86298 1.77180 1.58443 1.17168 1.25279 0.98398 1.00829 0.97497 1.23108 0.90111 1.01792 0.94196 1.70000 1.37043 1.12820 1.04755 1.29518 0.88662 0.95043 1.00602 1.87286 1.16349 1.69136 1.27793 0.92275 0.77940 0.87090 0.88045 0.86678 0.74411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.19 13.96 21.45 0.30 -56.89 14 2 C 0.03 1.84 5.47 84.66 0.46 2.30 14 3 Si 0.97 46.66 26.18 68.60 1.80 48.46 14 4 H -0.28 -13.34 7.11 99.48 0.71 -12.63 14 5 H -0.30 -14.36 7.11 99.48 0.71 -13.66 14 6 H -0.26 -11.70 6.54 99.48 0.65 -11.05 14 7 C -0.55 -30.14 8.80 25.60 0.23 -29.92 14 8 H 0.04 2.60 7.83 -2.91 -0.02 2.58 14 9 C 0.21 9.28 1.98 29.85 0.06 9.34 14 10 H 0.08 3.40 7.20 -2.39 -0.02 3.39 14 11 O -0.58 -25.40 10.37 -148.98 -1.55 -26.94 14 12 C -0.09 -3.25 3.22 30.84 0.10 -3.15 14 13 C 0.04 1.25 7.02 86.91 0.61 1.86 14 14 N -0.53 -15.79 10.82 -350.92 -3.80 -19.59 14 15 C 0.18 4.79 12.50 130.88 1.64 6.42 14 16 S -0.23 -8.19 20.80 -56.49 -1.17 -9.36 14 17 H 0.27 15.42 8.31 -92.71 -0.77 14.65 14 18 H 0.37 15.53 7.78 -74.06 -0.58 14.95 14 19 H 0.11 4.02 8.14 -2.39 -0.02 4.01 14 20 H 0.10 3.27 7.36 -2.39 -0.02 3.25 14 21 H 0.12 3.01 8.14 -2.39 -0.02 2.99 14 22 H 0.24 3.88 8.06 -2.91 -0.02 3.86 14 Total: -1.00 -64.42 204.71 -0.73 -65.15 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 0.60 Total: 12.33 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: 3.09 Total: -13.15 kcal Atomic # 7 Polarization: -72.98 SS G_CDS: -3.50 Total: -76.48 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -1.55 Total: -26.94 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 1.80 Total: 48.46 kcal Atomic # 16 Polarization: -8.19 SS G_CDS: -1.17 Total: -9.36 kcal Total: -64.42 -0.73 -65.15 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725542750.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.521 kcal (2) G-P(sol) polarization free energy of solvation -64.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds