Wall clock time and date at job start Mon Mar 30 2020 01:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30853 * 1 3 3 Si 1.86798 * 120.00601 * 2 1 4 4 H 1.48509 * 109.46905 * 274.98860 * 3 2 1 5 5 H 1.48500 * 109.46887 * 34.98031 * 3 2 1 6 6 H 1.48493 * 109.47417 * 154.98484 * 3 2 1 7 7 C 1.40079 * 119.99471 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99598 * 186.19556 * 7 2 1 9 9 C 1.40061 * 120.00032 * 6.20222 * 7 2 1 10 10 C 1.39622 * 127.05880 * 172.97549 * 9 7 2 11 11 N 1.33015 * 107.46370 * 180.02562 * 10 9 7 12 12 C 1.31017 * 109.97793 * 359.97438 * 11 10 9 13 13 C 1.50704 * 125.17297 * 180.02562 * 12 11 10 14 14 Cl 1.80291 * 109.47119 * 269.97334 * 13 12 11 15 15 N 1.35069 * 109.64704 * 0.02562 * 12 11 10 16 16 H 0.97008 * 126.48534 * 179.73509 * 15 12 11 17 17 H 0.97005 * 119.99447 * 0.02562 * 1 2 3 18 18 H 1.08000 * 126.26741 * 0.04855 * 10 9 7 19 19 H 1.09000 * 109.47507 * 29.98091 * 13 12 11 20 20 H 1.09006 * 109.46719 * 149.97702 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2427 1.6176 0.0000 4 1 2.3848 2.1071 -1.3949 5 1 1.4968 2.6199 0.8027 6 1 3.5889 1.4119 0.5920 7 6 2.0088 -1.2132 0.0005 8 1 3.0841 -1.2159 0.1015 9 6 1.3145 -2.4226 -0.1300 10 6 1.8651 -3.6964 -0.2838 11 7 0.8565 -4.5593 -0.3709 12 6 -0.2856 -3.9234 -0.2828 13 6 -1.6458 -4.5697 -0.3398 14 17 -2.2103 -4.6319 -2.0509 15 7 -0.0583 -2.6004 -0.1331 16 1 -0.7300 -1.9057 -0.0479 17 1 -0.4849 0.8401 -0.0004 18 1 2.9171 -3.9371 -0.3243 19 1 -1.5841 -5.5820 0.0595 20 1 -2.3500 -3.9871 0.2542 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757120616.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:22 Heat of formation + Delta-G solvation = 16.153743 kcal Electronic energy + Delta-G solvation = -9172.018530 eV Core-core repulsion = 7201.379724 eV Total energy + Delta-G solvation = -1970.638806 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 186.025 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -39.94758 -35.26497 -33.86142 -30.56703 -30.15006 -27.39546 -23.78853 -20.00780 -18.93574 -17.90076 -15.53028 -14.87070 -14.16057 -13.56472 -12.91772 -12.57686 -12.39762 -11.92005 -11.64906 -11.39215 -10.86072 -10.47403 -9.91527 -9.81473 -9.59224 -8.51638 -8.36516 -7.22015 -7.06613 -4.46729 2.62953 2.89871 2.99078 3.03995 3.74753 3.80885 4.54445 4.83562 5.21215 5.40479 5.73486 6.02027 6.77544 7.04963 7.13560 7.60795 7.73488 8.38183 8.54536 8.66115 9.35445 9.70203 10.02077 Molecular weight = 186.03amu Principal moments of inertia in cm(-1) A = 0.065035 B = 0.011585 C = 0.010335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.432493 B = 2416.295900 C = 2708.553416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.066 3.934 3 Si 0.933 3.067 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.260 1.260 7 C -0.437 4.437 8 H 0.097 0.903 9 C 0.209 3.791 10 C -0.172 4.172 11 N -0.456 5.456 12 C 0.048 3.952 13 C 0.086 3.914 14 Cl -0.211 7.211 15 N -0.558 5.558 16 H 0.422 0.578 17 H 0.288 0.712 18 H 0.144 0.856 19 H 0.103 0.897 20 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.695 0.099 0.652 2.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.148 4.148 3 Si 0.758 3.242 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.184 1.184 7 C -0.473 4.473 8 H 0.115 0.885 9 C 0.090 3.910 10 C -0.324 4.324 11 N -0.177 5.177 12 C -0.205 4.205 13 C 0.022 3.978 14 Cl -0.186 7.186 15 N -0.174 5.174 16 H 0.268 0.732 17 H 0.099 0.901 18 H 0.162 0.838 19 H 0.121 0.879 20 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.909 -0.716 0.434 3.027 hybrid contribution -0.084 2.012 0.010 2.014 sum -2.993 1.295 0.444 3.291 Atomic orbital electron populations 1.68952 1.07858 1.30131 1.40582 1.25992 0.94899 1.02046 0.91838 0.85868 0.80062 0.79249 0.79066 1.19430 1.20259 1.18381 1.18837 0.95465 0.88165 1.44832 0.88516 1.19020 0.81493 0.94981 0.95539 1.22220 0.96621 0.88777 1.24756 1.69168 0.97548 1.35121 1.15833 1.21571 0.94177 0.82814 1.21915 1.22025 0.91293 1.02338 0.82130 1.98700 1.90810 1.99218 1.29845 1.43440 1.08386 1.07361 1.58224 0.73183 0.90110 0.83816 0.87881 0.89260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -20.53 10.83 55.56 0.60 -19.92 14 2 C 0.07 1.59 5.49 -17.28 -0.09 1.49 14 3 Si 0.93 18.13 29.57 -169.99 -5.03 13.11 14 4 H -0.27 -5.23 7.11 56.52 0.40 -4.83 14 5 H -0.28 -5.29 7.11 56.52 0.40 -4.88 14 6 H -0.26 -4.96 7.11 56.52 0.40 -4.56 14 7 C -0.44 -11.24 9.36 -38.21 -0.36 -11.60 14 8 H 0.10 2.34 7.86 -52.48 -0.41 1.93 14 9 C 0.21 5.60 6.74 -83.68 -0.56 5.03 14 10 C -0.17 -4.51 11.98 -16.52 -0.20 -4.71 14 11 N -0.46 -11.79 11.18 -9.76 -0.11 -11.90 14 12 C 0.05 1.14 7.48 -154.96 -1.16 -0.02 14 13 C 0.09 1.61 7.28 36.01 0.26 1.88 14 14 Cl -0.21 -4.00 29.13 -51.86 -1.51 -5.51 14 15 N -0.56 -14.15 5.82 -7.86 -0.05 -14.20 14 16 H 0.42 10.48 6.49 -40.82 -0.27 10.22 14 17 H 0.29 6.38 8.30 -40.82 -0.34 6.04 14 18 H 0.14 3.45 8.06 -52.49 -0.42 3.02 14 19 H 0.10 1.73 8.14 -51.93 -0.42 1.31 14 20 H 0.09 1.45 8.14 -51.93 -0.42 1.03 14 LS Contribution 203.15 15.07 3.06 3.06 Total: -1.00 -27.79 203.15 -6.22 -34.01 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -1.08 Total: 9.28 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: -2.11 Total: -7.93 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: 0.45 Total: -46.03 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.03 Total: 13.11 kcal Atomic # 17 Polarization: -4.00 SS G_CDS: -1.51 Total: -5.51 kcal Total LS contribution 3.06 Total: 3.06 kcal Total: -27.79 -6.22 -34.01 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757120616.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.166 kcal (2) G-P(sol) polarization free energy of solvation -27.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds