Wall clock time and date at job start Mon Mar 30 2020 01:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42895 * 114.00205 * 2 1 4 4 C 1.50706 * 115.55061 * 65.60324 * 3 2 1 5 5 O 1.21209 * 120.00310 * 184.67605 * 4 3 2 6 6 O 1.34316 * 119.99498 * 4.67138 * 4 3 2 7 7 C 1.34919 * 117.00029 * 180.02562 * 6 4 3 8 8 H 1.08001 * 119.99814 * 359.97438 * 7 6 4 9 9 C 1.38756 * 120.00422 * 180.02562 * 7 6 4 10 10 N 1.31436 * 119.99446 * 0.02562 * 9 7 6 11 11 Si 1.86789 * 120.00086 * 179.72043 * 9 7 6 12 12 H 1.48502 * 109.47377 * 60.00041 * 11 9 7 13 13 H 1.48504 * 109.47070 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47435 * 300.00210 * 11 9 7 15 15 C 1.52998 * 117.50410 * 211.26926 * 3 2 1 16 16 C 1.52998 * 117.50273 * 279.93440 * 3 2 1 17 17 H 1.09004 * 109.47164 * 184.96551 * 1 2 3 18 18 H 1.08996 * 109.47238 * 304.96591 * 1 2 3 19 19 H 1.08998 * 109.47145 * 64.96952 * 1 2 3 20 20 H 0.97001 * 120.00052 * 180.02562 * 10 9 7 21 21 H 1.08994 * 117.50222 * 215.00522 * 15 3 2 22 22 H 1.08998 * 117.49501 * 0.02981 * 15 3 2 23 23 H 1.08998 * 117.49531 * 359.97133 * 16 3 2 24 24 H 1.08993 * 117.50318 * 144.99496 * 16 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.7616 2.1276 1.2383 5 8 2.1446 3.2765 1.2900 6 8 1.1154 1.5873 2.2845 7 6 0.9251 2.3776 3.3614 8 1 1.2871 3.3951 3.3552 9 6 0.2653 1.8827 4.4772 10 7 -0.1739 0.6439 4.4853 11 14 0.0087 2.9744 5.9710 12 1 -0.7878 4.1660 5.5825 13 1 -0.7176 2.2148 7.0203 14 1 1.3269 3.4105 6.4978 15 6 3.3573 1.4790 -0.7044 16 6 2.0838 2.0461 -1.3367 17 1 -0.3634 -1.0238 0.0890 18 1 -0.3633 0.5889 0.8421 19 1 -0.3633 0.4348 -0.9311 20 1 -0.6355 0.2980 5.2651 21 1 4.0635 2.1879 -0.2723 22 1 3.7999 0.5976 -1.1683 23 1 1.6892 1.5374 -2.2163 24 1 1.9523 3.1279 -1.3206 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830844082.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:39 Heat of formation + Delta-G solvation = -115.607532 kcal Electronic energy + Delta-G solvation = -11568.269420 eV Core-core repulsion = 9254.748195 eV Total energy + Delta-G solvation = -2313.521225 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 186.072 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.43128 -39.27292 -37.50295 -35.47492 -34.32837 -28.11896 -27.68351 -25.27351 -23.53015 -21.23076 -19.99889 -19.29841 -17.29930 -16.87665 -16.63889 -16.18150 -15.83330 -15.27777 -14.96652 -14.33222 -13.68473 -13.27820 -12.75275 -12.56126 -12.36320 -12.22311 -12.16048 -12.02362 -11.75756 -11.10249 -10.73110 -10.54760 -8.57476 -6.38528 1.15365 1.31390 1.47958 1.50398 2.03654 2.38315 2.51912 2.82809 3.01905 3.69464 3.88690 4.28757 4.44949 4.57451 4.60506 4.61222 4.81216 4.96323 5.09588 5.10972 5.77199 5.99132 6.54249 6.85985 7.70033 8.62351 Molecular weight = 186.07amu Principal moments of inertia in cm(-1) A = 0.060504 B = 0.012468 C = 0.010886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.667201 B = 2245.201946 C = 2571.410643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.348 6.348 3 C 0.002 3.998 4 C 0.406 3.594 5 O -0.577 6.577 6 O -0.227 6.227 7 C -0.431 4.431 8 H 0.082 0.918 9 C -0.001 4.001 10 N -0.897 5.897 11 Si 1.019 2.981 12 H -0.260 1.260 13 H -0.258 1.258 14 H -0.262 1.262 15 C -0.107 4.107 16 C -0.141 4.141 17 H 0.105 0.895 18 H 0.022 0.978 19 H 0.066 0.934 20 H 0.280 0.720 21 H 0.108 0.892 22 H 0.143 0.857 23 H 0.144 0.856 24 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.406 -0.192 -8.010 8.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.266 6.266 3 C -0.040 4.040 4 C 0.254 3.746 5 O -0.477 6.477 6 O -0.134 6.134 7 C -0.506 4.506 8 H 0.099 0.901 9 C -0.202 4.202 10 N -0.533 5.533 11 Si 0.838 3.162 12 H -0.185 1.185 13 H -0.182 1.182 14 H -0.186 1.186 15 C -0.144 4.144 16 C -0.178 4.178 17 H 0.124 0.876 18 H 0.041 0.959 19 H 0.084 0.916 20 H 0.090 0.910 21 H 0.127 0.873 22 H 0.161 0.839 23 H 0.162 0.838 24 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.477 -0.261 -7.843 7.985 hybrid contribution -0.401 0.584 0.904 1.148 sum 1.076 0.322 -6.939 7.029 Atomic orbital electron populations 1.22917 0.79623 1.03821 1.00398 1.87811 1.21459 1.22947 1.94358 1.21387 1.06304 0.86357 0.89954 1.23714 0.78300 0.86584 0.86003 1.90507 1.53886 1.20085 1.83191 1.83966 1.63158 1.43568 1.22745 1.21485 1.40526 0.96411 0.92215 0.90070 1.26580 0.94238 0.98283 1.01092 1.70082 1.35550 1.15910 1.31802 0.84670 0.79384 0.77224 0.74956 1.18452 1.18162 1.18635 1.23454 0.88754 1.03901 0.98267 1.23703 1.00178 1.01003 0.92952 0.87649 0.95938 0.91550 0.91046 0.87344 0.83886 0.83814 0.87789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.04 10.79 113.37 1.22 2.26 14 2 O -0.35 -14.18 10.73 -137.86 -1.48 -15.66 14 3 C 0.00 0.08 2.47 -11.54 -0.03 0.05 14 4 C 0.41 21.79 7.29 71.24 0.52 22.31 14 5 O -0.58 -32.69 15.71 20.78 0.33 -32.37 14 6 O -0.23 -14.01 7.97 19.28 0.15 -13.86 14 7 C -0.43 -26.97 9.65 67.94 0.66 -26.32 14 8 H 0.08 5.12 6.86 -2.91 -0.02 5.10 14 9 C 0.00 -0.05 5.49 84.88 0.47 0.41 14 10 N -0.90 -53.83 13.67 21.62 0.30 -53.53 14 11 Si 1.02 43.97 29.55 68.60 2.03 46.00 14 12 H -0.26 -10.74 7.11 99.48 0.71 -10.04 14 13 H -0.26 -10.18 7.11 99.48 0.71 -9.47 14 14 H -0.26 -10.91 7.11 99.48 0.71 -10.20 14 15 C -0.11 -3.22 10.05 30.62 0.31 -2.91 14 16 C -0.14 -4.14 10.00 30.62 0.31 -3.83 14 17 H 0.11 3.36 8.14 -2.39 -0.02 3.34 14 18 H 0.02 1.02 6.40 -2.39 -0.02 1.01 14 19 H 0.07 1.96 8.14 -2.39 -0.02 1.94 14 20 H 0.28 15.19 8.31 -92.71 -0.77 14.42 14 21 H 0.11 3.33 8.13 -2.39 -0.02 3.31 14 22 H 0.14 3.32 8.14 -2.39 -0.02 3.30 14 23 H 0.14 3.14 8.14 -2.39 -0.02 3.12 14 24 H 0.10 3.17 7.97 -2.39 -0.02 3.15 14 Total: -1.00 -74.43 224.91 5.97 -68.46 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: 1.20 Total: 8.99 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: 3.45 Total: -8.02 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: 0.30 Total: -53.53 kcal Atomic # 8 Polarization: -60.89 SS G_CDS: -1.00 Total: -61.89 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -74.43 5.97 -68.46 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830844082.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.152 kcal (2) G-P(sol) polarization free energy of solvation -74.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds