Wall clock time and date at job start Mon Mar 30 2020 01:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42891 * 114.00590 * 2 1 4 4 H 1.09007 * 115.54864 * 4.32761 * 3 2 1 5 5 C 1.53004 * 117.51938 * 218.62970 * 3 2 1 6 6 C 1.52997 * 60.00001 * 252.51221 * 5 3 2 7 7 H 1.09001 * 117.51759 * 107.47445 * 6 5 3 8 8 C 1.50694 * 117.50125 * 252.51063 * 6 5 3 9 9 O 1.21203 * 120.00203 * 68.61758 * 8 6 5 10 10 O 1.34312 * 119.99759 * 248.62161 * 8 6 5 11 11 C 1.34924 * 117.00282 * 180.02562 * 10 8 6 12 12 H 1.08002 * 119.99441 * 359.97438 * 11 10 8 13 13 C 1.38753 * 120.00042 * 180.27691 * 11 10 8 14 14 N 1.31442 * 119.99872 * 179.72272 * 13 11 10 15 15 Si 1.86800 * 120.00071 * 359.72055 * 13 11 10 16 16 H 1.48506 * 109.46719 * 90.00397 * 15 13 11 17 17 H 1.48501 * 109.46793 * 210.00052 * 15 13 11 18 18 H 1.48489 * 109.47333 * 330.00296 * 15 13 11 19 19 H 1.08996 * 109.46977 * 59.99896 * 1 2 3 20 20 H 1.08992 * 109.47775 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.46884 * 300.00569 * 1 2 3 22 22 H 1.08996 * 117.49808 * 145.02452 * 5 3 2 23 23 H 1.08996 * 117.49747 * 0.02562 * 5 3 2 24 24 H 0.96995 * 120.00118 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 1 1.3057 2.1337 0.0742 5 6 3.2663 1.5199 -0.8471 6 6 3.3714 1.4727 0.6785 7 1 3.8233 0.5870 1.1250 8 6 3.6352 2.7700 1.3983 9 8 2.7843 3.6328 1.4239 10 8 4.8133 2.9703 2.0115 11 6 4.9847 4.1530 2.6378 12 1 4.1932 4.8877 2.6301 13 6 6.1801 4.4277 3.2864 14 7 6.3491 5.5821 3.8919 15 14 7.5494 3.1571 3.2991 16 1 8.4284 3.3650 2.1204 17 1 8.3471 3.3016 4.5433 18 1 6.9610 1.7948 3.2438 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3634 -1.0275 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 3.3879 2.4893 -1.3302 23 1 3.6491 0.6653 -1.4049 24 1 7.1846 5.7740 4.3456 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924122004.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:41 Heat of formation + Delta-G solvation = -116.865134 kcal Electronic energy + Delta-G solvation = -11101.133194 eV Core-core repulsion = 8787.557436 eV Total energy + Delta-G solvation = -2313.575759 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 186.072 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.39676 -39.46618 -37.52263 -35.77356 -34.52986 -28.40175 -27.49833 -25.19494 -23.15528 -21.27650 -20.19056 -19.09230 -17.61694 -17.00393 -16.70717 -16.32107 -15.97057 -15.56414 -14.60829 -14.28335 -13.95741 -13.34812 -13.27989 -12.52782 -12.43704 -12.29852 -12.27223 -11.88934 -11.67529 -11.18779 -10.86460 -10.32454 -8.58158 -6.45687 1.17075 1.32644 1.46122 1.54428 2.00230 2.27008 2.66306 2.82304 2.96139 3.62286 3.85965 4.04953 4.35064 4.45022 4.55116 4.60321 4.77727 4.84406 4.96391 5.43992 5.85385 6.10484 6.45948 6.77870 7.54102 8.54592 Molecular weight = 186.07amu Principal moments of inertia in cm(-1) A = 0.073843 B = 0.009443 C = 0.008871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 379.092060 B = 2964.401243 C = 3155.566055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.368 6.368 3 C 0.057 3.943 4 H 0.118 0.882 5 C -0.130 4.130 6 C -0.175 4.175 7 H 0.147 0.853 8 C 0.439 3.561 9 O -0.576 6.576 10 O -0.252 6.252 11 C -0.413 4.413 12 H 0.058 0.942 13 C 0.016 3.984 14 N -0.914 5.914 15 Si 0.985 3.015 16 H -0.257 1.257 17 H -0.263 1.263 18 H -0.253 1.253 19 H 0.060 0.940 20 H 0.113 0.887 21 H 0.043 0.957 22 H 0.109 0.891 23 H 0.144 0.856 24 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.191 -12.573 -8.494 16.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.286 6.286 3 C -0.002 4.002 4 H 0.135 0.865 5 C -0.167 4.167 6 C -0.195 4.195 7 H 0.165 0.835 8 C 0.287 3.713 9 O -0.472 6.472 10 O -0.161 6.161 11 C -0.488 4.488 12 H 0.076 0.924 13 C -0.184 4.184 14 N -0.554 5.554 15 Si 0.805 3.195 16 H -0.182 1.182 17 H -0.187 1.187 18 H -0.177 1.177 19 H 0.078 0.922 20 H 0.131 0.869 21 H 0.061 0.939 22 H 0.127 0.873 23 H 0.162 0.838 24 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.175 -12.373 -8.352 15.800 hybrid contribution 0.133 0.597 0.518 0.802 sum -5.042 -11.776 -7.834 15.015 Atomic orbital electron populations 1.23112 0.78370 1.04653 1.01163 1.87770 1.22394 1.24522 1.93964 1.22671 0.89243 0.87127 1.01112 0.86462 1.23633 0.98614 1.05533 0.88876 1.22103 1.05595 0.93986 0.97768 0.83528 1.23155 0.80145 0.89207 0.78800 1.90556 1.47144 1.47604 1.61945 1.83517 1.35798 1.37469 1.59337 1.20365 1.03389 0.91359 1.33733 0.92378 1.25605 1.00015 0.99266 0.93525 1.69698 1.28260 1.23776 1.33636 0.85049 0.76838 0.78629 0.79013 1.18163 1.18731 1.17688 0.92163 0.86895 0.93866 0.87309 0.83846 0.89934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 10.88 113.37 1.23 1.66 14 2 O -0.37 -9.71 10.96 -148.98 -1.63 -11.34 14 3 C 0.06 1.70 5.96 30.60 0.18 1.88 14 4 H 0.12 3.66 7.45 -2.38 -0.02 3.65 14 5 C -0.13 -3.50 10.18 30.59 0.31 -3.19 14 6 C -0.18 -6.20 6.25 -11.54 -0.07 -6.27 14 7 H 0.15 4.69 8.14 -2.39 -0.02 4.67 14 8 C 0.44 21.75 7.69 71.23 0.55 22.30 14 9 O -0.58 -32.16 15.49 20.80 0.32 -31.84 14 10 O -0.25 -14.00 8.58 14.82 0.13 -13.87 14 11 C -0.41 -26.05 10.10 67.94 0.69 -25.36 14 12 H 0.06 4.14 7.09 -2.91 -0.02 4.12 14 13 C 0.02 0.95 5.49 84.87 0.47 1.42 14 14 N -0.91 -55.84 13.96 21.62 0.30 -55.54 14 15 Si 0.99 44.32 28.62 68.60 1.96 46.29 14 16 H -0.26 -10.89 7.11 99.48 0.71 -10.18 14 17 H -0.26 -10.94 7.11 99.48 0.71 -10.23 14 18 H -0.25 -11.06 7.11 99.48 0.71 -10.35 14 19 H 0.06 0.95 8.14 -2.39 -0.02 0.93 14 20 H 0.11 1.53 8.14 -2.39 -0.02 1.51 14 21 H 0.04 0.84 8.14 -2.39 -0.02 0.82 14 22 H 0.11 2.96 8.14 -2.39 -0.02 2.95 14 23 H 0.14 2.95 8.14 -2.39 -0.02 2.93 14 24 H 0.29 15.92 8.31 -92.71 -0.77 15.15 14 Total: -1.00 -73.56 227.17 5.63 -67.93 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: 1.20 Total: 5.95 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: 3.36 Total: -7.57 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: 0.30 Total: -55.54 kcal Atomic # 8 Polarization: -55.87 SS G_CDS: -1.18 Total: -57.05 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.96 Total: 46.29 kcal Total: -73.56 5.63 -67.93 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924122004.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.939 kcal (2) G-P(sol) polarization free energy of solvation -73.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds