Wall clock time and date at job start Mon Mar 30 2020 01:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00006 * 2 1 4 4 H 1.48507 * 109.47063 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47472 * 299.99920 * 3 2 1 6 6 H 1.48496 * 109.47070 * 60.00275 * 3 2 1 7 7 C 1.37880 * 120.00139 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99895 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99915 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.46943 * 180.02562 * 9 7 2 11 11 O 1.41463 * 124.16108 * 254.99675 * 10 9 7 12 12 C 1.44532 * 107.87818 * 198.78413 * 11 10 9 13 13 C 1.54601 * 102.32163 * 333.08913 * 12 11 10 14 14 H 1.08998 * 110.73255 * 143.62003 * 13 12 11 15 15 N 1.46905 * 110.73356 * 266.75119 * 13 12 11 16 16 C 1.34781 * 124.16522 * 75.00386 * 10 9 7 17 17 O 1.21286 * 126.23685 * 358.81446 * 16 10 9 18 18 H 0.96993 * 119.99617 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.46830 * 60.00053 * 9 7 2 20 20 H 1.08997 * 109.47084 * 300.00395 * 9 7 2 21 21 H 1.08994 * 110.94514 * 214.87755 * 12 11 10 22 22 H 1.08998 * 110.84968 * 91.25535 * 12 11 10 23 23 H 1.00901 * 110.99869 * 177.52730 * 15 13 12 24 24 H 1.00896 * 110.99543 * 301.47853 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 8 2.4890 -4.4133 -1.1312 12 6 3.0976 -5.6385 -0.6648 13 6 3.7514 -5.1968 0.6647 14 1 3.6843 -5.9896 1.4097 15 7 5.1506 -4.8037 0.4509 16 6 2.9143 -4.0004 1.0767 17 8 2.8896 -3.4865 2.1750 18 1 -0.4849 0.8400 -0.0004 19 1 0.6241 -2.5567 -0.8903 20 1 0.6247 -2.5571 0.8896 21 1 3.8517 -5.9913 -1.3683 22 1 2.3424 -6.4044 -0.4890 23 1 5.5694 -4.4765 1.3087 24 1 5.6833 -5.5639 0.0554 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958715447.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:17 Heat of formation + Delta-G solvation = -17.616628 kcal Electronic energy + Delta-G solvation = -11525.761779 eV Core-core repulsion = 9248.782510 eV Total energy + Delta-G solvation = -2276.979270 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 186.079 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.83042 -36.64697 -34.34782 -33.15650 -31.37342 -28.22077 -27.06071 -23.66131 -21.87790 -19.85614 -16.89391 -16.44799 -16.13524 -15.62745 -15.36772 -14.50650 -13.82149 -13.51432 -13.20703 -12.97752 -12.25420 -12.09780 -11.53078 -11.04778 -10.74708 -10.61876 -10.18494 -9.56408 -9.25378 -8.70579 -8.47693 -7.69709 -6.08779 -4.12886 2.79730 3.08032 3.32829 3.39329 3.47694 4.25399 4.44016 4.53380 4.84023 4.91228 5.26598 5.36831 5.55856 5.71864 6.90482 6.97316 7.11405 7.31803 7.38781 7.88682 8.06585 8.18565 8.73022 8.94938 9.51650 10.99664 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.056377 B = 0.011907 C = 0.011250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.538045 B = 2351.071629 C = 2488.186829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.061 3.939 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.065 0.935 9 C 0.270 3.730 10 N -0.450 5.450 11 O -0.154 6.154 12 C 0.036 3.964 13 C 0.026 3.974 14 H 0.075 0.925 15 N -0.822 5.822 16 C 0.513 3.487 17 O -0.515 6.515 18 H 0.265 0.735 19 H 0.050 0.950 20 H 0.052 0.948 21 H 0.107 0.893 22 H 0.077 0.923 23 H 0.353 0.647 24 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.344 -10.791 -0.804 12.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.141 4.141 3 Si 0.734 3.266 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.565 4.565 8 H 0.083 0.917 9 C 0.155 3.845 10 N -0.229 5.229 11 O -0.157 6.157 12 C -0.042 4.042 13 C -0.090 4.090 14 H 0.093 0.907 15 N -0.357 5.357 16 C 0.297 3.703 17 O -0.391 6.391 18 H 0.074 0.926 19 H 0.068 0.932 20 H 0.069 0.931 21 H 0.125 0.875 22 H 0.095 0.905 23 H 0.167 0.833 24 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.732 -9.717 -0.982 11.325 hybrid contribution 0.759 -0.133 0.569 0.958 sum 6.491 -9.850 -0.413 11.804 Atomic orbital electron populations 1.69937 1.06010 1.27259 1.50432 1.24922 0.94974 0.99352 0.94809 0.86296 0.80130 0.82636 0.77556 1.19556 1.20838 1.20800 1.21480 0.93968 0.89889 1.51209 0.91651 1.19613 0.86006 0.79730 0.99168 1.51047 1.42396 1.28646 1.00857 1.91044 1.82805 1.27135 1.14703 1.23875 0.96959 0.88046 0.95335 1.22783 0.91243 0.97291 0.97651 0.90735 1.58416 1.00651 1.41607 1.34980 1.20340 0.80583 0.85019 0.84339 1.90730 1.66197 1.60690 1.21442 0.92564 0.93222 0.93076 0.87459 0.90527 0.83284 0.84100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.74 13.29 55.43 0.74 -26.01 14 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 14 3 Si 0.91 22.45 29.54 -169.99 -5.02 17.43 14 4 H -0.27 -6.70 7.11 56.52 0.40 -6.30 14 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 14 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 14 7 C -0.53 -15.64 9.27 -34.44 -0.32 -15.96 14 8 H 0.07 2.00 7.81 -52.48 -0.41 1.59 14 9 C 0.27 7.38 5.98 -5.20 -0.03 7.35 14 10 N -0.45 -10.72 3.71 -61.10 -0.23 -10.95 14 11 O -0.15 -3.16 12.38 -11.40 -0.14 -3.30 14 12 C 0.04 0.51 7.87 38.00 0.30 0.80 14 13 C 0.03 0.40 4.21 -67.52 -0.28 0.12 14 14 H 0.07 0.95 8.14 -51.93 -0.42 0.53 14 15 N -0.82 -11.36 9.30 -4.50 -0.04 -11.40 14 16 C 0.51 11.45 7.74 -10.48 -0.08 11.37 14 17 O -0.51 -13.23 17.81 5.55 0.10 -13.13 14 18 H 0.26 7.39 8.31 -40.82 -0.34 7.05 14 19 H 0.05 1.37 8.14 -51.93 -0.42 0.95 14 20 H 0.05 1.47 8.14 -51.93 -0.42 1.05 14 21 H 0.11 1.19 8.04 -51.93 -0.42 0.77 14 22 H 0.08 0.89 8.14 -51.93 -0.42 0.47 14 23 H 0.35 4.69 9.07 -39.29 -0.36 4.34 14 24 H 0.35 3.36 9.00 -39.29 -0.35 3.01 14 LS Contribution 222.68 15.07 3.36 3.36 Total: -1.00 -33.93 222.68 -4.12 -38.05 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -2.36 Total: 0.57 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: -0.51 Total: 5.38 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: 0.47 Total: -48.35 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.04 Total: -16.43 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -33.93 -4.12 -38.05 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958715447.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.432 kcal (2) G-P(sol) polarization free energy of solvation -33.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds