Wall clock time and date at job start Mon Mar 30 2020 01:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99801 * 2 1 4 4 H 1.48496 * 109.47058 * 269.99892 * 3 2 1 5 5 H 1.48499 * 109.47010 * 30.00273 * 3 2 1 6 6 H 1.48502 * 109.46818 * 149.99951 * 3 2 1 7 7 C 1.37875 * 119.99839 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99996 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99943 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46801 * 179.97438 * 9 7 2 11 11 O 1.41459 * 124.16051 * 254.69825 * 10 9 7 12 12 C 1.44231 * 107.73761 * 161.10197 * 11 10 9 13 13 C 1.54606 * 102.46600 * 27.25973 * 12 11 10 14 14 H 1.09000 * 110.88835 * 216.20692 * 13 12 11 15 15 N 1.46904 * 110.73111 * 92.96930 * 13 12 11 16 16 C 1.34776 * 124.16003 * 75.00177 * 10 9 7 17 17 O 1.21280 * 126.24178 * 1.17808 * 16 10 9 18 18 H 0.97003 * 120.00175 * 0.02562 * 1 2 3 19 19 H 1.08994 * 109.47143 * 60.00454 * 9 7 2 20 20 H 1.08996 * 109.47365 * 300.00064 * 9 7 2 21 21 H 1.08998 * 111.02478 * 268.94065 * 12 11 10 22 22 H 1.09002 * 110.80819 * 145.48649 * 12 11 10 23 23 H 1.00906 * 110.99475 * 185.09896 * 15 13 12 24 24 H 1.00900 * 111.00239 * 309.05475 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 8 2.4844 -4.4171 -1.1285 12 6 3.7433 -5.0804 -0.8927 13 6 3.7950 -5.1593 0.6505 14 1 4.8141 -5.0236 1.0126 15 7 3.2423 -6.4351 1.1247 16 6 2.9142 -4.0003 1.0778 17 8 2.8599 -3.5118 2.1865 18 1 -0.4850 0.8401 -0.0004 19 1 0.6248 -2.5571 -0.8897 20 1 0.6240 -2.5567 0.8902 21 1 4.5746 -4.4900 -1.2779 22 1 3.7434 -6.0782 -1.3314 23 1 3.1973 -6.4573 2.1325 24 1 2.3354 -6.6096 0.7184 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958715448.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:18 Heat of formation + Delta-G solvation = -48.428444 kcal Electronic energy + Delta-G solvation = -11536.848380 eV Core-core repulsion = 9258.533010 eV Total energy + Delta-G solvation = -2278.315370 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 186.079 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.57854 -38.45557 -36.00564 -34.90183 -33.35349 -29.67125 -28.92368 -25.56195 -23.43021 -21.66361 -18.87139 -18.33261 -18.03221 -17.17611 -16.60653 -16.19946 -15.67251 -15.15853 -14.94491 -14.61444 -14.16453 -13.69740 -13.23843 -12.72276 -12.68292 -12.33796 -12.15883 -11.72037 -11.56792 -10.74491 -9.85497 -9.63260 -8.33789 -6.50153 1.03848 1.35707 1.37519 1.39715 1.50037 2.33436 2.86714 2.98639 3.36352 3.39068 3.76252 4.24964 4.57521 4.68379 4.82078 4.90353 5.27905 5.60406 5.74711 5.82008 6.18703 6.39458 6.54103 6.95476 7.21323 8.73802 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.064670 B = 0.011256 C = 0.011037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.861819 B = 2486.905703 C = 2536.307066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.014 3.986 3 Si 0.976 3.024 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.556 4.556 8 H 0.053 0.947 9 C 0.280 3.720 10 N -0.471 5.471 11 O -0.170 6.170 12 C 0.030 3.970 13 C 0.050 3.950 14 H 0.144 0.856 15 N -0.802 5.802 16 C 0.453 3.547 17 O -0.560 6.560 18 H 0.273 0.727 19 H 0.036 0.964 20 H 0.022 0.978 21 H 0.099 0.901 22 H 0.156 0.844 23 H 0.357 0.643 24 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.131 -9.507 -1.959 12.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.187 4.187 3 Si 0.799 3.201 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.594 4.594 8 H 0.071 0.929 9 C 0.162 3.838 10 N -0.249 5.249 11 O -0.173 6.173 12 C -0.046 4.046 13 C -0.066 4.066 14 H 0.162 0.838 15 N -0.333 5.333 16 C 0.239 3.761 17 O -0.439 6.439 18 H 0.082 0.918 19 H 0.054 0.946 20 H 0.040 0.960 21 H 0.117 0.883 22 H 0.173 0.827 23 H 0.171 0.829 24 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 7.371 -9.448 -1.961 12.143 hybrid contribution -0.638 1.480 0.447 1.672 sum 6.733 -7.968 -1.514 10.541 Atomic orbital electron populations 1.70024 1.07450 1.28797 1.49882 1.25862 0.95960 1.03068 0.93766 0.85295 0.78234 0.77661 0.78927 1.18784 1.19877 1.19751 1.21610 0.93375 0.91473 1.52984 0.92916 1.19066 0.86659 0.80885 0.97149 1.50969 1.42509 1.28960 1.02476 1.90965 1.41093 1.58510 1.26767 1.24371 0.86341 1.00669 0.93203 1.22998 1.00319 0.86325 0.96933 0.83811 1.59159 1.32218 1.27249 1.14667 1.22967 0.83016 0.86314 0.83792 1.90689 1.68898 1.61965 1.22355 0.91840 0.94626 0.96031 0.88285 0.82681 0.82901 0.83672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.87 13.29 21.45 0.28 -54.58 14 2 C 0.01 0.78 5.46 84.65 0.46 1.24 14 3 Si 0.98 44.72 29.54 68.60 2.03 46.74 14 4 H -0.26 -11.37 7.11 99.48 0.71 -10.66 14 5 H -0.27 -12.06 7.11 99.48 0.71 -11.35 14 6 H -0.27 -12.43 7.11 99.48 0.71 -11.72 14 7 C -0.56 -32.68 9.27 25.60 0.24 -32.44 14 8 H 0.05 3.11 7.81 -2.91 -0.02 3.08 14 9 C 0.28 15.49 5.98 85.63 0.51 16.00 14 10 N -0.47 -21.60 3.71 -465.60 -1.73 -23.33 14 11 O -0.17 -6.33 12.37 -38.47 -0.48 -6.81 14 12 C 0.03 0.76 7.77 72.53 0.56 1.33 14 13 C 0.05 1.40 4.25 45.04 0.19 1.59 14 14 H 0.14 3.41 8.14 -2.39 -0.02 3.39 14 15 N -0.80 -18.24 9.34 -168.15 -1.57 -19.81 14 16 C 0.45 19.26 7.72 87.98 0.68 19.94 14 17 O -0.56 -28.59 17.81 -3.03 -0.05 -28.64 14 18 H 0.27 15.05 8.31 -92.71 -0.77 14.28 14 19 H 0.04 2.02 8.14 -2.39 -0.02 2.00 14 20 H 0.02 1.31 8.14 -2.39 -0.02 1.29 14 21 H 0.10 2.19 8.14 -2.39 -0.02 2.17 14 22 H 0.16 2.71 8.09 -2.39 -0.02 2.69 14 23 H 0.36 7.90 9.06 -89.69 -0.81 7.08 14 24 H 0.35 7.92 8.96 -89.69 -0.80 7.11 14 Total: -1.00 -70.14 222.63 0.74 -69.40 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -0.39 Total: 9.38 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: 2.65 Total: 7.65 kcal Atomic # 7 Polarization: -94.71 SS G_CDS: -3.01 Total: -97.73 kcal Atomic # 8 Polarization: -34.92 SS G_CDS: -0.53 Total: -35.45 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -70.14 0.74 -69.40 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958715448.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.972 kcal (2) G-P(sol) polarization free energy of solvation -70.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds