Wall clock time and date at job start Mon Mar 30 2020 01:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 110.38582 * 2 1 4 4 S 1.83394 * 110.34262 * 122.22992 * 2 1 3 5 5 C 1.83987 * 95.85159 * 138.62450 * 4 2 1 6 6 C 1.55156 * 100.91149 * 324.64766 * 5 4 2 7 7 C 1.52946 * 108.95788 * 41.43737 * 6 5 4 8 8 H 1.09007 * 108.88512 * 90.55433 * 7 6 5 9 9 C 1.50698 * 108.88649 * 209.10426 * 7 6 5 10 10 H 1.08001 * 119.99906 * 54.87074 * 9 7 6 11 11 C 1.37873 * 119.99924 * 234.86434 * 9 7 6 12 12 N 1.31513 * 120.00205 * 0.02562 * 11 9 7 13 13 Si 1.86804 * 119.99939 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47024 * 89.99889 * 13 11 9 15 15 H 1.48498 * 109.47464 * 209.99992 * 13 11 9 16 16 H 1.48499 * 109.46987 * 330.00189 * 13 11 9 17 17 H 1.08995 * 109.47267 * 299.22129 * 1 2 3 18 18 H 1.08996 * 109.47290 * 59.22711 * 1 2 3 19 19 H 1.09005 * 109.46768 * 179.22379 * 1 2 3 20 20 H 1.09001 * 109.47223 * 180.77007 * 3 2 1 21 21 H 1.08994 * 109.47008 * 300.77832 * 3 2 1 22 22 H 1.09002 * 109.46736 * 60.77611 * 3 2 1 23 23 H 1.09003 * 111.13281 * 82.56137 * 5 4 2 24 24 H 1.08995 * 111.13467 * 206.73761 * 5 4 2 25 25 H 1.08992 * 109.60586 * 161.36918 * 6 5 4 26 26 H 1.08996 * 109.60337 * 281.50965 * 6 5 4 27 27 H 0.97002 * 120.00012 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0630 1.4342 0.0000 4 16 2.1675 -0.9171 1.4546 5 6 3.5205 -1.7796 0.5543 6 6 2.8496 -2.0200 -0.8239 7 6 2.0643 -0.7685 -1.2192 8 1 2.7166 -0.1088 -1.7915 9 6 0.9016 -1.1760 -2.0870 10 1 0.1975 -1.9151 -1.7342 11 6 0.7366 -0.6053 -3.3312 12 7 1.5942 0.2944 -3.7609 13 14 -0.7051 -1.1100 -4.4065 14 1 -1.8665 -0.2292 -4.1227 15 1 -0.3248 -0.9823 -5.8363 16 1 -1.0701 -2.5197 -4.1154 17 1 -0.3633 0.5017 0.8968 18 1 -0.3634 0.5258 -0.8829 19 1 -0.3633 -1.0276 -0.0139 20 1 3.1528 1.4169 -0.0138 21 1 1.6966 1.9579 -0.8829 22 1 1.7192 1.9495 0.8969 23 1 4.3983 -1.1405 0.4579 24 1 3.7749 -2.7230 1.0373 25 1 3.6150 -2.2232 -1.5728 26 1 2.1719 -2.8711 -0.7573 27 1 1.4779 0.6962 -4.6361 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535649363.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:32 Heat of formation + Delta-G solvation = -21.300901 kcal Electronic energy + Delta-G solvation = -10096.167401 eV Core-core repulsion = 8365.321584 eV Total energy + Delta-G solvation = -1730.845817 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -36.65751 -32.17323 -31.72742 -27.28065 -26.01132 -23.47432 -21.39746 -18.66398 -16.41289 -15.27967 -14.66277 -14.25326 -13.37780 -12.93646 -12.47530 -12.24482 -11.87743 -11.81299 -11.27675 -10.90672 -10.64181 -10.48278 -10.24100 -10.07292 -9.69107 -9.50039 -8.87404 -8.66446 -8.52051 -6.93593 -6.10896 -4.11096 2.78651 3.22343 3.29592 3.33043 3.37008 4.36324 5.18082 5.69360 5.74288 5.93770 5.96655 6.09141 6.20996 6.48851 6.57599 6.66850 6.80215 6.84211 6.96001 7.04893 7.32653 7.50134 7.69900 7.82209 8.31152 8.95949 9.49239 10.97974 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.053732 B = 0.014931 C = 0.014186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.979743 B = 1874.866779 C = 1973.311697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.020 3.980 3 C -0.121 4.121 4 S -0.367 6.367 5 C -0.063 4.063 6 C -0.110 4.110 7 C 0.022 3.978 8 H 0.078 0.922 9 C -0.499 4.499 10 H 0.058 0.942 11 C 0.065 3.935 12 N -0.893 5.893 13 Si 0.889 3.111 14 H -0.279 1.279 15 H -0.287 1.287 16 H -0.273 1.273 17 H 0.022 0.978 18 H 0.071 0.929 19 H 0.060 0.940 20 H 0.047 0.953 21 H 0.067 0.933 22 H 0.041 0.959 23 H 0.075 0.925 24 H 0.085 0.915 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.077 -0.748 4.325 4.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.089 4.089 3 C -0.180 4.180 4 S -0.139 6.139 5 C -0.211 4.211 6 C -0.149 4.149 7 C 0.001 3.999 8 H 0.096 0.904 9 C -0.538 4.538 10 H 0.076 0.924 11 C -0.137 4.137 12 N -0.531 5.531 13 Si 0.717 3.283 14 H -0.205 1.205 15 H -0.212 1.212 16 H -0.198 1.198 17 H 0.041 0.959 18 H 0.090 0.910 19 H 0.079 0.921 20 H 0.067 0.933 21 H 0.086 0.914 22 H 0.061 0.939 23 H 0.094 0.906 24 H 0.103 0.897 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.780 -0.674 5.343 5.441 hybrid contribution -0.344 -0.203 -1.766 1.811 sum 0.436 -0.876 3.577 3.708 Atomic orbital electron populations 1.21556 0.92528 1.02022 0.99234 1.23605 0.98257 0.95762 0.91296 1.21908 1.00152 0.95081 1.00877 1.87228 1.41892 1.60372 1.24437 1.24230 0.97149 1.00801 0.98910 1.22574 0.98389 1.01625 0.92267 1.19570 0.96589 0.92201 0.91492 0.90388 1.21008 1.09737 1.23025 1.00005 0.92352 1.24976 0.96159 0.94817 0.97777 1.69877 1.35872 1.27730 1.19612 0.86631 0.82776 0.79164 0.79746 1.20526 1.21238 1.19794 0.95898 0.91005 0.92126 0.93342 0.91378 0.93949 0.90631 0.89656 0.92148 0.91863 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.03 7.42 37.16 0.28 -1.75 15 2 C 0.02 0.44 1.17 -90.25 -0.11 0.33 15 3 C -0.12 -2.45 8.37 37.16 0.31 -2.14 15 4 S -0.37 -7.53 22.10 -107.50 -2.38 -9.90 15 5 C -0.06 -1.16 7.52 38.30 0.29 -0.87 15 6 C -0.11 -2.31 5.79 -25.62 -0.15 -2.46 15 7 C 0.02 0.52 2.63 -91.43 -0.24 0.28 15 8 H 0.08 2.06 6.36 -51.92 -0.33 1.73 15 9 C -0.50 -12.85 5.64 -34.44 -0.19 -13.05 15 10 H 0.06 1.52 7.02 -52.49 -0.37 1.15 15 11 C 0.06 1.71 5.46 -17.82 -0.10 1.61 15 12 N -0.89 -24.58 12.59 55.43 0.70 -23.89 15 13 Si 0.89 20.55 29.54 -169.99 -5.02 15.53 15 14 H -0.28 -6.41 7.11 56.52 0.40 -6.00 15 15 H -0.29 -6.64 7.11 56.52 0.40 -6.24 15 16 H -0.27 -6.27 7.11 56.52 0.40 -5.87 15 17 H 0.02 0.44 8.14 -51.93 -0.42 0.01 15 18 H 0.07 1.62 7.49 -51.93 -0.39 1.23 15 19 H 0.06 1.33 7.01 -51.93 -0.36 0.96 15 20 H 0.05 0.95 8.14 -51.93 -0.42 0.53 15 21 H 0.07 1.45 8.14 -51.93 -0.42 1.03 15 22 H 0.04 0.78 8.14 -51.93 -0.42 0.36 15 23 H 0.08 1.32 8.14 -51.93 -0.42 0.89 15 24 H 0.08 1.39 8.14 -51.93 -0.42 0.97 15 25 H 0.06 1.24 8.14 -51.93 -0.42 0.82 15 26 H 0.06 1.36 7.83 -51.93 -0.41 0.95 15 27 H 0.26 6.93 8.31 -40.82 -0.34 6.59 15 LS Contribution 230.56 15.07 3.47 3.47 Total: -1.00 -26.65 230.56 -7.09 -33.74 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -3.95 Total: -0.89 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: 0.09 Total: -18.06 kcal Atomic # 7 Polarization: -24.58 SS G_CDS: 0.70 Total: -23.89 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: -7.53 SS G_CDS: -2.38 Total: -9.90 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -26.65 -7.09 -33.74 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535649363.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.441 kcal (2) G-P(sol) polarization free energy of solvation -26.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds