Wall clock time and date at job start Mon Mar 30 2020 01:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 110.38582 * 2 1 4 4 S 1.83394 * 110.34262 * 122.22992 * 2 1 3 5 5 C 1.83987 * 95.85159 * 138.62450 * 4 2 1 6 6 C 1.55156 * 100.91149 * 324.64766 * 5 4 2 7 7 C 1.52946 * 108.95788 * 41.43737 * 6 5 4 8 8 H 1.09007 * 108.88512 * 90.55433 * 7 6 5 9 9 C 1.50698 * 108.88649 * 209.10426 * 7 6 5 10 10 H 1.08001 * 119.99906 * 54.87074 * 9 7 6 11 11 C 1.37873 * 119.99924 * 234.86434 * 9 7 6 12 12 N 1.31513 * 120.00205 * 0.02562 * 11 9 7 13 13 Si 1.86804 * 119.99939 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47024 * 89.99889 * 13 11 9 15 15 H 1.48498 * 109.47464 * 209.99992 * 13 11 9 16 16 H 1.48499 * 109.46987 * 330.00189 * 13 11 9 17 17 H 1.08995 * 109.47267 * 299.22129 * 1 2 3 18 18 H 1.08996 * 109.47290 * 59.22711 * 1 2 3 19 19 H 1.09005 * 109.46768 * 179.22379 * 1 2 3 20 20 H 1.09001 * 109.47223 * 180.77007 * 3 2 1 21 21 H 1.08994 * 109.47008 * 300.77832 * 3 2 1 22 22 H 1.09002 * 109.46736 * 60.77611 * 3 2 1 23 23 H 1.09003 * 111.13281 * 82.56137 * 5 4 2 24 24 H 1.08995 * 111.13467 * 206.73761 * 5 4 2 25 25 H 1.08992 * 109.60586 * 161.36918 * 6 5 4 26 26 H 1.08996 * 109.60337 * 281.50965 * 6 5 4 27 27 H 0.97002 * 120.00012 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0630 1.4342 0.0000 4 16 2.1675 -0.9171 1.4546 5 6 3.5205 -1.7796 0.5543 6 6 2.8496 -2.0200 -0.8239 7 6 2.0643 -0.7685 -1.2192 8 1 2.7166 -0.1088 -1.7915 9 6 0.9016 -1.1760 -2.0870 10 1 0.1975 -1.9151 -1.7342 11 6 0.7366 -0.6053 -3.3312 12 7 1.5942 0.2944 -3.7609 13 14 -0.7051 -1.1100 -4.4065 14 1 -1.8665 -0.2292 -4.1227 15 1 -0.3248 -0.9823 -5.8363 16 1 -1.0701 -2.5197 -4.1154 17 1 -0.3633 0.5017 0.8968 18 1 -0.3634 0.5258 -0.8829 19 1 -0.3633 -1.0276 -0.0139 20 1 3.1528 1.4169 -0.0138 21 1 1.6966 1.9579 -0.8829 22 1 1.7192 1.9495 0.8969 23 1 4.3983 -1.1405 0.4579 24 1 3.7749 -2.7230 1.0373 25 1 3.6150 -2.2232 -1.5728 26 1 2.1719 -2.8711 -0.7573 27 1 1.4779 0.6962 -4.6361 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535649363.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:32 Heat of formation + Delta-G solvation = -34.917904 kcal Electronic energy + Delta-G solvation = -10096.757879 eV Core-core repulsion = 8365.321584 eV Total energy + Delta-G solvation = -1731.436295 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.44006 -34.14822 -33.37740 -29.09106 -27.74817 -25.32940 -23.08012 -20.45924 -18.39399 -16.93250 -16.54586 -15.93932 -15.11582 -14.68738 -14.11132 -13.95314 -13.66055 -13.57140 -13.00022 -12.68766 -12.44371 -12.29689 -11.99992 -11.74672 -11.46627 -11.21709 -10.79712 -10.59502 -10.34343 -8.55234 -8.12007 -6.16532 1.18737 1.40487 1.44227 1.52226 1.63038 2.43662 3.18672 4.06561 4.17572 4.26317 4.32328 4.51826 4.61292 4.86440 4.88947 4.98664 5.07259 5.12728 5.24027 5.34809 5.55559 5.68571 5.75634 5.83875 6.34980 6.94633 7.45748 8.96602 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.053732 B = 0.014931 C = 0.014186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.979743 B = 1874.866779 C = 1973.311697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.012 3.988 3 C -0.113 4.113 4 S -0.365 6.365 5 C -0.051 4.051 6 C -0.108 4.108 7 C 0.018 3.982 8 H 0.048 0.952 9 C -0.502 4.502 10 H 0.052 0.948 11 C 0.020 3.980 12 N -0.923 5.923 13 Si 0.944 3.056 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.269 1.269 17 H 0.042 0.958 18 H 0.053 0.947 19 H 0.050 0.950 20 H 0.051 0.949 21 H 0.049 0.951 22 H 0.061 0.939 23 H 0.089 0.911 24 H 0.115 0.885 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.135 -1.291 5.246 5.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 C -0.172 4.172 4 S -0.137 6.137 5 C -0.199 4.199 6 C -0.147 4.147 7 C -0.003 4.003 8 H 0.066 0.934 9 C -0.540 4.540 10 H 0.070 0.930 11 C -0.179 4.179 12 N -0.563 5.563 13 Si 0.770 3.230 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.194 1.194 17 H 0.061 0.939 18 H 0.071 0.929 19 H 0.069 0.931 20 H 0.070 0.930 21 H 0.068 0.932 22 H 0.080 0.920 23 H 0.108 0.892 24 H 0.133 0.867 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.833 -1.226 6.275 6.447 hybrid contribution -0.328 -0.064 -2.008 2.035 sum 0.505 -1.290 4.267 4.486 Atomic orbital electron populations 1.21443 0.92506 1.01343 0.99314 1.23482 0.98433 0.96443 0.91430 1.21817 1.00262 0.94220 1.00914 1.87188 1.42721 1.60400 1.23408 1.24297 0.96530 1.02279 0.96744 1.22438 0.98264 0.99927 0.94112 1.19566 0.95773 0.92925 0.92021 0.93400 1.21204 1.10052 1.22409 1.00375 0.92997 1.25597 0.98249 0.95007 0.99025 1.69990 1.37431 1.28959 1.19911 0.85769 0.80232 0.78900 0.78111 1.20158 1.21253 1.19392 0.93922 0.92859 0.93059 0.93010 0.93201 0.92022 0.89198 0.86700 0.91976 0.92464 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.67 7.42 71.98 0.53 -3.14 15 2 C 0.01 0.49 1.17 -10.55 -0.01 0.48 15 3 C -0.11 -4.47 8.37 71.98 0.60 -3.87 15 4 S -0.36 -14.05 22.10 -56.49 -1.25 -15.30 15 5 C -0.05 -1.72 7.52 72.72 0.55 -1.18 15 6 C -0.11 -4.42 5.79 31.32 0.18 -4.24 15 7 C 0.02 0.83 2.63 -11.32 -0.03 0.80 15 8 H 0.05 2.55 6.36 -2.38 -0.02 2.53 15 9 C -0.50 -25.86 5.64 25.60 0.14 -25.71 15 10 H 0.05 2.70 7.02 -2.91 -0.02 2.68 15 11 C 0.02 1.06 5.46 84.65 0.46 1.52 15 12 N -0.92 -51.51 12.59 21.45 0.27 -51.24 15 13 Si 0.94 42.21 29.54 68.60 2.03 44.24 15 14 H -0.28 -12.10 7.11 99.48 0.71 -11.40 15 15 H -0.29 -12.75 7.11 99.48 0.71 -12.05 15 16 H -0.27 -11.77 7.11 99.48 0.71 -11.06 15 17 H 0.04 1.59 8.14 -2.39 -0.02 1.57 15 18 H 0.05 2.40 7.49 -2.39 -0.02 2.39 15 19 H 0.05 2.20 7.01 -2.38 -0.02 2.19 15 20 H 0.05 1.97 8.14 -2.39 -0.02 1.95 15 21 H 0.05 2.13 8.14 -2.39 -0.02 2.11 15 22 H 0.06 2.16 8.14 -2.39 -0.02 2.14 15 23 H 0.09 2.84 8.14 -2.39 -0.02 2.82 15 24 H 0.11 3.27 8.14 -2.39 -0.02 3.25 15 25 H 0.06 2.48 8.14 -2.39 -0.02 2.46 15 26 H 0.06 2.38 7.83 -2.39 -0.02 2.36 15 27 H 0.26 13.98 8.31 -92.71 -0.77 13.21 15 Total: -1.00 -55.08 230.56 4.60 -50.48 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: 1.13 Total: 7.16 kcal Atomic # 6 Polarization: -37.77 SS G_CDS: 2.43 Total: -35.34 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: 0.27 Total: -51.24 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Atomic # 16 Polarization: -14.05 SS G_CDS: -1.25 Total: -15.30 kcal Total: -55.08 4.60 -50.48 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535649363.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.560 kcal (2) G-P(sol) polarization free energy of solvation -55.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds