Wall clock time and date at job start Mon Mar 30 2020 01:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 110.30754 * 2 1 4 4 S 1.83393 * 110.34161 * 237.82757 * 2 1 3 5 5 C 1.84211 * 95.77881 * 221.43159 * 4 2 1 6 6 C 1.55156 * 100.95906 * 35.24694 * 5 4 2 7 7 C 1.52942 * 108.96448 * 318.63025 * 6 5 4 8 8 H 1.08999 * 108.88168 * 269.30620 * 7 6 5 9 9 C 1.50693 * 108.77674 * 150.81518 * 7 6 5 10 10 H 1.08001 * 120.00128 * 302.26615 * 9 7 6 11 11 C 1.37873 * 120.00198 * 122.26628 * 9 7 6 12 12 N 1.31519 * 120.00186 * 5.87153 * 11 9 7 13 13 Si 1.86807 * 120.00333 * 185.87373 * 11 9 7 14 14 H 1.48496 * 109.47254 * 94.95136 * 13 11 9 15 15 H 1.48496 * 109.46787 * 214.95648 * 13 11 9 16 16 H 1.48505 * 109.46602 * 334.95433 * 13 11 9 17 17 H 1.09004 * 109.46467 * 59.29870 * 1 2 3 18 18 H 1.08996 * 109.47728 * 179.29774 * 1 2 3 19 19 H 1.09001 * 109.46755 * 299.30043 * 1 2 3 20 20 H 1.09006 * 109.47130 * 60.70275 * 3 2 1 21 21 H 1.08998 * 109.47247 * 180.69959 * 3 2 1 22 22 H 1.08995 * 109.47450 * 300.70021 * 3 2 1 23 23 H 1.09004 * 111.05227 * 277.34998 * 5 4 2 24 24 H 1.08993 * 111.19947 * 153.21920 * 5 4 2 25 25 H 1.08998 * 109.60370 * 198.69035 * 6 5 4 26 26 H 1.09009 * 109.60065 * 78.55797 * 6 5 4 27 27 H 0.96995 * 120.00176 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0610 1.4348 0.0000 4 16 2.1675 -0.9156 -1.4555 5 6 3.5204 -1.7804 -0.5526 6 6 2.8494 -2.0193 0.8258 7 6 2.0642 -0.7674 1.2200 8 1 2.7158 -0.1084 1.7937 9 6 0.9012 -1.1771 2.0862 10 1 0.1726 -1.8821 1.7140 11 6 0.7672 -0.6519 3.3540 12 7 1.5863 0.2914 3.7650 13 14 -0.5778 -1.2801 4.4880 14 1 -0.0270 -2.3413 5.3688 15 1 -1.0865 -0.1605 5.3202 16 1 -1.6890 -1.8381 3.6761 17 1 -0.3632 0.5247 -0.8837 18 1 -0.3634 -1.0275 -0.0126 19 1 -0.3633 0.5029 0.8962 20 1 1.7154 1.9501 0.8963 21 1 3.1508 1.4190 -0.0125 22 1 1.6951 1.9577 -0.8836 23 1 4.3982 -1.1413 -0.4568 24 1 3.7753 -2.7242 -1.0345 25 1 3.6148 -2.2220 1.5749 26 1 2.1716 -2.8705 0.7599 27 1 1.4923 0.6606 4.6570 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535649372.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:33 Heat of formation + Delta-G solvation = -21.170220 kcal Electronic energy + Delta-G solvation = -10090.397899 eV Core-core repulsion = 8359.557749 eV Total energy + Delta-G solvation = -1730.840150 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -36.65529 -32.18088 -31.72032 -27.28086 -26.00798 -23.46702 -21.39509 -18.67148 -16.40690 -15.27779 -14.65687 -14.24513 -13.38505 -12.93009 -12.47045 -12.26009 -11.88411 -11.80952 -11.25279 -10.92124 -10.62828 -10.47724 -10.23646 -10.06493 -9.69590 -9.50945 -8.88169 -8.67527 -8.49405 -6.93678 -6.11408 -4.11023 2.78517 3.22035 3.29667 3.33551 3.37036 4.36488 5.17419 5.69185 5.74533 5.93794 5.96587 6.09142 6.21300 6.49419 6.57457 6.67091 6.80564 6.84725 6.96166 7.05333 7.33317 7.49898 7.69601 7.82341 8.31221 8.95930 9.49223 10.97544 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.053611 B = 0.014873 C = 0.014097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.159360 B = 1882.102607 C = 1985.743267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.021 3.979 3 C -0.121 4.121 4 S -0.368 6.368 5 C -0.062 4.062 6 C -0.110 4.110 7 C 0.022 3.978 8 H 0.078 0.922 9 C -0.500 4.500 10 H 0.059 0.941 11 C 0.065 3.935 12 N -0.892 5.892 13 Si 0.889 3.111 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.272 1.272 17 H 0.022 0.978 18 H 0.058 0.942 19 H 0.073 0.927 20 H 0.068 0.932 21 H 0.047 0.953 22 H 0.041 0.959 23 H 0.075 0.925 24 H 0.085 0.915 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.165 -0.837 -4.270 4.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.088 4.088 3 C -0.180 4.180 4 S -0.141 6.141 5 C -0.210 4.210 6 C -0.149 4.149 7 C 0.002 3.998 8 H 0.096 0.904 9 C -0.539 4.539 10 H 0.077 0.923 11 C -0.137 4.137 12 N -0.530 5.530 13 Si 0.717 3.283 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.197 1.197 17 H 0.041 0.959 18 H 0.077 0.923 19 H 0.092 0.908 20 H 0.087 0.913 21 H 0.066 0.934 22 H 0.060 0.940 23 H 0.094 0.906 24 H 0.103 0.897 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.862 -0.756 -5.294 5.417 hybrid contribution -0.273 -0.293 1.808 1.851 sum 0.590 -1.049 -3.487 3.688 Atomic orbital electron populations 1.21572 0.92524 1.01831 0.99470 1.23574 0.98264 0.95758 0.91230 1.21910 1.00089 0.95057 1.00994 1.87267 1.42044 1.60353 1.24399 1.24255 0.97104 1.00765 0.98863 1.22596 0.98389 1.01687 0.92250 1.19570 0.96632 0.92108 0.91509 0.90427 1.21030 1.09005 1.25485 0.98346 0.92262 1.24981 0.96074 0.94544 0.98131 1.69892 1.38026 1.26180 1.18899 0.86621 0.82206 0.78578 0.80937 1.20693 1.21237 1.19678 0.95906 0.92252 0.90804 0.91274 0.93374 0.93965 0.90647 0.89663 0.92180 0.91833 0.92809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.04 7.42 37.16 0.28 -1.77 15 2 C 0.02 0.46 1.17 -90.25 -0.11 0.35 15 3 C -0.12 -2.46 8.37 37.15 0.31 -2.15 15 4 S -0.37 -7.56 22.11 -107.50 -2.38 -9.94 15 5 C -0.06 -1.14 7.53 38.30 0.29 -0.85 15 6 C -0.11 -2.32 5.79 -25.62 -0.15 -2.47 15 7 C 0.02 0.52 2.63 -91.44 -0.24 0.28 15 8 H 0.08 2.05 6.38 -51.93 -0.33 1.72 15 9 C -0.50 -12.86 5.67 -34.45 -0.20 -13.06 15 10 H 0.06 1.54 6.93 -52.49 -0.36 1.18 15 11 C 0.06 1.71 5.45 -17.82 -0.10 1.61 15 12 N -0.89 -24.54 12.61 55.43 0.70 -23.84 15 13 Si 0.89 20.54 29.54 -169.99 -5.02 15.52 15 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 15 H -0.29 -6.63 7.11 56.52 0.40 -6.22 15 16 H -0.27 -6.22 7.11 56.52 0.40 -5.82 15 17 H 0.02 0.44 8.14 -51.93 -0.42 0.01 15 18 H 0.06 1.30 7.04 -51.93 -0.37 0.94 15 19 H 0.07 1.67 7.41 -51.93 -0.38 1.28 15 20 H 0.07 1.48 8.14 -51.93 -0.42 1.05 15 21 H 0.05 0.94 8.14 -51.93 -0.42 0.52 15 22 H 0.04 0.78 8.14 -51.93 -0.42 0.35 15 23 H 0.07 1.31 8.14 -51.93 -0.42 0.89 15 24 H 0.08 1.39 8.14 -51.93 -0.42 0.96 15 25 H 0.06 1.23 8.14 -51.93 -0.42 0.81 15 26 H 0.06 1.36 7.82 -51.92 -0.41 0.96 15 27 H 0.26 6.91 8.31 -40.82 -0.34 6.58 15 LS Contribution 230.49 15.07 3.47 3.47 Total: -1.00 -26.65 230.49 -7.08 -33.73 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -3.95 Total: -0.89 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: 0.09 Total: -18.05 kcal Atomic # 7 Polarization: -24.54 SS G_CDS: 0.70 Total: -23.84 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: -7.56 SS G_CDS: -2.38 Total: -9.94 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -26.65 -7.08 -33.73 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535649372.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.560 kcal (2) G-P(sol) polarization free energy of solvation -26.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds