Wall clock time and date at job start Mon Mar 30 2020 02:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.87048 * 2 1 4 4 O 1.43747 * 109.88016 * 238.99674 * 2 1 3 5 5 C 1.44373 * 106.97610 * 213.91218 * 4 2 1 6 6 C 1.54994 * 103.63253 * 39.98001 * 5 4 2 7 7 C 1.54099 * 110.00555 * 121.08811 * 2 1 3 8 8 H 1.08996 * 110.49213 * 240.33161 * 7 2 1 9 9 C 1.53006 * 110.48570 * 2.84785 * 7 2 1 10 10 H 1.09005 * 109.46961 * 54.25123 * 9 7 2 11 11 O 1.42895 * 109.47000 * 294.25217 * 9 7 2 12 12 C 1.50704 * 109.46871 * 174.24788 * 9 7 2 13 13 H 1.07996 * 120.00174 * 0.02562 * 12 9 7 14 14 C 1.37879 * 119.99549 * 180.02562 * 12 9 7 15 15 N 1.31517 * 119.99511 * 180.02562 * 14 12 9 16 16 Si 1.86799 * 120.00115 * 359.97438 * 14 12 9 17 17 H 1.48502 * 109.46795 * 90.00380 * 16 14 12 18 18 H 1.48500 * 109.46859 * 210.00299 * 16 14 12 19 19 H 1.48498 * 109.47214 * 329.99971 * 16 14 12 20 20 H 1.08997 * 109.47291 * 183.15945 * 1 2 3 21 21 H 1.08999 * 109.47323 * 303.16222 * 1 2 3 22 22 H 1.09003 * 109.47352 * 63.15992 * 1 2 3 23 23 H 1.09003 * 110.62263 * 158.55934 * 5 4 2 24 24 H 1.09002 * 110.62029 * 281.40046 * 5 4 2 25 25 H 1.09002 * 110.90722 * 81.25223 * 6 5 4 26 26 H 1.09004 * 110.90983 * 204.85610 * 6 5 4 27 27 H 0.96700 * 114.00002 * 299.99472 * 11 9 7 28 28 H 0.96996 * 119.99336 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9004 1.0252 0.0000 4 8 2.0188 -0.6963 -1.1587 5 6 3.2397 -1.3601 -0.7676 6 6 2.9285 -1.8885 0.6558 7 6 2.0571 -0.7477 1.2400 8 1 2.6625 -0.0838 1.8571 9 6 0.8952 -1.3214 2.0536 10 1 0.2686 -1.9368 1.4079 11 8 0.1170 -0.2510 2.5927 12 6 1.4378 -2.1645 3.1787 13 1 2.5046 -2.2792 3.3015 14 6 0.5721 -2.7892 4.0513 15 7 1.0457 -3.5246 5.0335 16 14 -1.2731 -2.5901 3.8392 17 1 -1.7879 -3.6632 2.9512 18 1 -1.9365 -2.6834 5.1645 19 1 -1.5616 -1.2653 3.2335 20 1 -0.3634 -1.0261 0.0566 21 1 -0.3634 0.5621 0.8603 22 1 -0.3634 0.4640 -0.9170 23 1 3.4612 -2.1860 -1.4437 24 1 4.0695 -0.6537 -0.7419 25 1 2.3665 -2.8213 0.6102 26 1 3.8447 -2.0158 1.2325 27 1 0.6115 0.3386 3.1783 28 1 0.4367 -3.9638 5.6475 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535810692.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:17 Heat of formation + Delta-G solvation = -98.167326 kcal Electronic energy + Delta-G solvation = -12191.442872 eV Core-core repulsion = 10014.511005 eV Total energy + Delta-G solvation = -2176.931867 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.31236 -36.01706 -32.32809 -31.70162 -30.80649 -27.34324 -25.06084 -22.26636 -21.55047 -19.04365 -17.40812 -15.88894 -15.29626 -15.04769 -14.72814 -14.04827 -13.60415 -12.78008 -12.61012 -12.06849 -11.84126 -11.73589 -11.10141 -11.01767 -10.60938 -10.48487 -10.32096 -10.04038 -9.75233 -9.20582 -8.90665 -8.61176 -8.17955 -6.13248 -4.23479 3.38367 3.47993 3.72816 4.38107 4.52562 5.14217 5.24182 5.41915 5.45611 5.54917 5.72027 5.82187 6.02237 6.14462 6.16404 6.35857 6.49716 6.60739 6.65591 6.78335 6.92791 7.30264 7.49935 7.60550 8.28667 8.82116 8.99240 9.51799 10.97385 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.052180 B = 0.015249 C = 0.012983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.478635 B = 1835.726559 C = 2156.220173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.077 3.923 3 H 0.054 0.946 4 O -0.385 6.385 5 C 0.042 3.958 6 C -0.132 4.132 7 C -0.131 4.131 8 H 0.072 0.928 9 C 0.203 3.797 10 H 0.061 0.939 11 O -0.578 6.578 12 C -0.560 4.560 13 H 0.073 0.927 14 C 0.082 3.918 15 N -0.894 5.894 16 Si 0.868 3.132 17 H -0.288 1.288 18 H -0.296 1.296 19 H -0.216 1.216 20 H 0.060 0.940 21 H 0.097 0.903 22 H 0.039 0.961 23 H 0.084 0.916 24 H 0.050 0.950 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.355 0.645 28 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.235 5.686 -7.730 9.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.020 3.980 3 H 0.072 0.928 4 O -0.305 6.305 5 C -0.034 4.034 6 C -0.170 4.170 7 C -0.150 4.150 8 H 0.091 0.909 9 C 0.146 3.854 10 H 0.078 0.922 11 O -0.384 6.384 12 C -0.598 4.598 13 H 0.091 0.909 14 C -0.123 4.123 15 N -0.531 5.531 16 Si 0.695 3.305 17 H -0.215 1.215 18 H -0.223 1.223 19 H -0.138 1.138 20 H 0.079 0.921 21 H 0.115 0.885 22 H 0.058 0.942 23 H 0.102 0.898 24 H 0.068 0.932 25 H 0.100 0.900 26 H 0.092 0.908 27 H 0.201 0.799 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.624 5.305 -8.153 9.747 hybrid contribution -0.148 0.046 0.621 0.640 sum 0.476 5.351 -7.532 9.252 Atomic orbital electron populations 1.22208 0.93577 1.03369 1.01938 1.22799 0.95606 0.94601 0.85012 0.92831 1.88807 1.39499 1.68055 1.34140 1.23550 0.87491 0.95811 0.96576 1.22979 1.00190 0.99653 0.94160 1.23140 0.98951 0.96750 0.96188 0.90928 1.19824 0.87722 0.85390 0.92502 0.92151 1.86676 1.42242 1.43140 1.66335 1.21553 0.95360 1.30576 1.12273 0.90940 1.25022 0.99842 0.93228 0.94160 1.69961 1.35787 1.31220 1.16167 0.87068 0.84804 0.81255 0.77379 1.21464 1.22326 1.13849 0.92075 0.88465 0.94192 0.89817 0.93157 0.89969 0.90775 0.79879 0.92649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 8.29 37.15 0.31 -2.44 15 2 C 0.08 1.38 4.03 -26.16 -0.11 1.27 15 3 H 0.05 0.88 8.14 -51.93 -0.42 0.46 15 4 O -0.39 -7.08 11.19 -35.23 -0.39 -7.48 15 5 C 0.04 0.67 7.71 38.21 0.29 0.96 15 6 C -0.13 -2.40 5.85 -24.63 -0.14 -2.55 15 7 C -0.13 -2.52 2.79 -88.99 -0.25 -2.77 15 8 H 0.07 1.36 8.14 -51.93 -0.42 0.93 15 9 C 0.20 4.55 1.08 -27.88 -0.03 4.52 15 10 H 0.06 1.45 5.81 -51.93 -0.30 1.14 15 11 O -0.58 -12.27 7.33 -35.23 -0.26 -12.53 15 12 C -0.56 -15.07 8.76 -34.44 -0.30 -15.37 15 13 H 0.07 2.10 7.69 -52.49 -0.40 1.70 15 14 C 0.08 2.31 5.47 -17.82 -0.10 2.22 15 15 N -0.89 -27.02 13.96 55.43 0.77 -26.25 15 16 Si 0.87 21.56 26.99 -169.99 -4.59 16.97 15 17 H -0.29 -7.22 7.11 56.52 0.40 -6.81 15 18 H -0.30 -7.44 7.11 56.52 0.40 -7.04 15 19 H -0.22 -5.16 5.31 56.52 0.30 -4.86 15 20 H 0.06 1.18 6.30 -51.93 -0.33 0.85 15 21 H 0.10 1.74 5.85 -51.93 -0.30 1.44 15 22 H 0.04 0.64 8.14 -51.93 -0.42 0.22 15 23 H 0.08 1.16 8.14 -51.93 -0.42 0.74 15 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 15 25 H 0.08 1.63 7.83 -51.93 -0.41 1.22 15 26 H 0.07 1.30 8.14 -51.93 -0.42 0.87 15 27 H 0.35 6.66 9.04 45.56 0.41 7.07 15 28 H 0.26 7.55 8.31 -40.82 -0.34 7.21 15 LS Contribution 222.64 15.07 3.36 3.36 Total: -1.00 -30.11 222.64 -4.54 -34.65 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -3.10 Total: 5.43 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: -0.32 Total: -14.15 kcal Atomic # 7 Polarization: -27.02 SS G_CDS: 0.77 Total: -26.25 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.65 Total: -20.00 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.59 Total: 16.97 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -30.11 -4.54 -34.65 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535810692.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.520 kcal (2) G-P(sol) polarization free energy of solvation -30.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds