Wall clock time and date at job start Mon Mar 30 2020 02:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.87048 * 2 1 4 4 O 1.43747 * 109.88016 * 238.99674 * 2 1 3 5 5 C 1.44373 * 106.97610 * 213.91218 * 4 2 1 6 6 C 1.54994 * 103.63253 * 39.98001 * 5 4 2 7 7 C 1.54099 * 110.00555 * 121.08811 * 2 1 3 8 8 H 1.08996 * 110.49213 * 240.33161 * 7 2 1 9 9 C 1.53006 * 110.48570 * 2.84785 * 7 2 1 10 10 H 1.09005 * 109.46961 * 54.25123 * 9 7 2 11 11 O 1.42895 * 109.47000 * 294.25217 * 9 7 2 12 12 C 1.50704 * 109.46871 * 174.24788 * 9 7 2 13 13 H 1.07996 * 120.00174 * 0.02562 * 12 9 7 14 14 C 1.37879 * 119.99549 * 180.02562 * 12 9 7 15 15 N 1.31517 * 119.99511 * 180.02562 * 14 12 9 16 16 Si 1.86799 * 120.00115 * 359.97438 * 14 12 9 17 17 H 1.48502 * 109.46795 * 90.00380 * 16 14 12 18 18 H 1.48500 * 109.46859 * 210.00299 * 16 14 12 19 19 H 1.48498 * 109.47214 * 329.99971 * 16 14 12 20 20 H 1.08997 * 109.47291 * 183.15945 * 1 2 3 21 21 H 1.08999 * 109.47323 * 303.16222 * 1 2 3 22 22 H 1.09003 * 109.47352 * 63.15992 * 1 2 3 23 23 H 1.09003 * 110.62263 * 158.55934 * 5 4 2 24 24 H 1.09002 * 110.62029 * 281.40046 * 5 4 2 25 25 H 1.09002 * 110.90722 * 81.25223 * 6 5 4 26 26 H 1.09004 * 110.90983 * 204.85610 * 6 5 4 27 27 H 0.96700 * 114.00002 * 299.99472 * 11 9 7 28 28 H 0.96996 * 119.99336 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9004 1.0252 0.0000 4 8 2.0188 -0.6963 -1.1587 5 6 3.2397 -1.3601 -0.7676 6 6 2.9285 -1.8885 0.6558 7 6 2.0571 -0.7477 1.2400 8 1 2.6625 -0.0838 1.8571 9 6 0.8952 -1.3214 2.0536 10 1 0.2686 -1.9368 1.4079 11 8 0.1170 -0.2510 2.5927 12 6 1.4378 -2.1645 3.1787 13 1 2.5046 -2.2792 3.3015 14 6 0.5721 -2.7892 4.0513 15 7 1.0457 -3.5246 5.0335 16 14 -1.2731 -2.5901 3.8392 17 1 -1.7879 -3.6632 2.9512 18 1 -1.9365 -2.6834 5.1645 19 1 -1.5616 -1.2653 3.2335 20 1 -0.3634 -1.0261 0.0566 21 1 -0.3634 0.5621 0.8603 22 1 -0.3634 0.4640 -0.9170 23 1 3.4612 -2.1860 -1.4437 24 1 4.0695 -0.6537 -0.7419 25 1 2.3665 -2.8213 0.6102 26 1 3.8447 -2.0158 1.2325 27 1 0.6115 0.3386 3.1783 28 1 0.4367 -3.9638 5.6475 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535810692.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:17 Heat of formation + Delta-G solvation = -120.640673 kcal Electronic energy + Delta-G solvation = -12192.417389 eV Core-core repulsion = 10014.511005 eV Total energy + Delta-G solvation = -2177.906384 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.77440 -37.70981 -34.43828 -33.26695 -32.20985 -29.19798 -26.60928 -24.07296 -22.93847 -20.62768 -19.38439 -17.38645 -16.86984 -16.79069 -16.36948 -15.67514 -15.29151 -14.72833 -14.18056 -13.71115 -13.34416 -13.27055 -12.93187 -12.77706 -12.28728 -12.22126 -11.76763 -11.59364 -11.49061 -10.83658 -10.78097 -10.55252 -9.95530 -8.32618 -6.44910 1.39900 1.45794 1.74429 2.44536 3.02102 3.07806 3.71765 3.93438 4.04511 4.09675 4.29875 4.41295 4.65283 4.73864 4.77169 4.90024 5.03709 5.13134 5.20360 5.26980 5.43040 5.56423 5.70383 6.08454 6.13927 6.67694 7.21961 7.38011 8.81403 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.052180 B = 0.015249 C = 0.012983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.478635 B = 1835.726559 C = 2156.220173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.081 3.919 3 H 0.076 0.924 4 O -0.400 6.400 5 C 0.048 3.952 6 C -0.136 4.136 7 C -0.132 4.132 8 H 0.079 0.921 9 C 0.214 3.786 10 H 0.049 0.951 11 O -0.576 6.576 12 C -0.554 4.554 13 H 0.041 0.959 14 C 0.025 3.975 15 N -0.942 5.942 16 Si 0.930 3.070 17 H -0.291 1.291 18 H -0.300 1.300 19 H -0.197 1.197 20 H 0.040 0.960 21 H 0.097 0.903 22 H 0.056 0.944 23 H 0.103 0.897 24 H 0.075 0.925 25 H 0.057 0.943 26 H 0.075 0.925 27 H 0.369 0.631 28 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.910 7.142 -9.099 11.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.024 3.976 3 H 0.094 0.906 4 O -0.320 6.320 5 C -0.028 4.028 6 C -0.174 4.174 7 C -0.151 4.151 8 H 0.098 0.902 9 C 0.156 3.844 10 H 0.067 0.933 11 O -0.383 6.383 12 C -0.592 4.592 13 H 0.059 0.941 14 C -0.174 4.174 15 N -0.582 5.582 16 Si 0.755 3.245 17 H -0.218 1.218 18 H -0.227 1.227 19 H -0.119 1.119 20 H 0.059 0.941 21 H 0.115 0.885 22 H 0.075 0.925 23 H 0.122 0.878 24 H 0.093 0.907 25 H 0.076 0.924 26 H 0.094 0.906 27 H 0.217 0.783 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.309 6.782 -9.534 11.704 hybrid contribution 0.041 -0.409 1.045 1.123 sum 0.350 6.373 -8.488 10.620 Atomic orbital electron populations 1.22163 0.93690 1.02177 1.02838 1.22792 0.95572 0.95306 0.83936 0.90569 1.88792 1.40580 1.68356 1.34245 1.23665 0.87309 0.96827 0.94962 1.22965 0.99801 0.98426 0.96241 1.23072 0.97887 0.97348 0.96784 0.90214 1.19551 0.88576 0.85260 0.91011 0.93327 1.86602 1.42240 1.42735 1.66758 1.21883 0.93926 1.30369 1.12989 0.94103 1.25847 1.04181 0.93265 0.94079 1.70087 1.37216 1.33204 1.17683 0.86129 0.79690 0.81784 0.76912 1.21827 1.22738 1.11892 0.94106 0.88488 0.92480 0.87843 0.90711 0.92369 0.90615 0.78312 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.01 8.29 71.98 0.60 -4.41 15 2 C 0.08 2.65 4.03 30.96 0.12 2.78 15 3 H 0.08 2.20 8.14 -2.38 -0.02 2.18 15 4 O -0.40 -13.48 11.19 -148.98 -1.67 -15.14 15 5 C 0.05 1.39 7.71 72.66 0.56 1.95 15 6 C -0.14 -4.80 5.85 31.96 0.19 -4.61 15 7 C -0.13 -4.83 2.79 -9.74 -0.03 -4.86 15 8 H 0.08 2.80 8.14 -2.39 -0.02 2.78 15 9 C 0.21 9.35 1.08 29.85 0.03 9.38 15 10 H 0.05 2.29 5.81 -2.38 -0.01 2.27 15 11 O -0.58 -23.08 7.33 -148.98 -1.09 -24.18 15 12 C -0.55 -29.95 8.76 25.60 0.22 -29.73 15 13 H 0.04 2.42 7.69 -2.91 -0.02 2.40 15 14 C 0.03 1.45 5.47 84.65 0.46 1.91 15 15 N -0.94 -58.10 13.96 21.45 0.30 -57.80 15 16 Si 0.93 44.55 26.99 68.60 1.85 46.40 15 17 H -0.29 -14.03 7.11 99.48 0.71 -13.33 15 18 H -0.30 -14.48 7.11 99.48 0.71 -13.78 15 19 H -0.20 -8.78 5.31 99.48 0.53 -8.25 15 20 H 0.04 1.49 6.30 -2.39 -0.02 1.48 15 21 H 0.10 3.19 5.85 -2.39 -0.01 3.17 15 22 H 0.06 1.67 8.14 -2.39 -0.02 1.65 15 23 H 0.10 2.56 8.14 -2.39 -0.02 2.54 15 24 H 0.07 1.82 8.14 -2.39 -0.02 1.80 15 25 H 0.06 2.30 7.83 -2.39 -0.02 2.28 15 26 H 0.08 2.59 8.14 -2.39 -0.02 2.57 15 27 H 0.37 12.88 9.04 -74.06 -0.67 12.21 15 28 H 0.26 15.43 8.31 -92.71 -0.77 14.66 15 Total: -1.00 -63.52 222.64 1.85 -61.67 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 0.30 Total: 16.64 kcal Atomic # 6 Polarization: -29.76 SS G_CDS: 2.16 Total: -27.59 kcal Atomic # 7 Polarization: -58.10 SS G_CDS: 0.30 Total: -57.80 kcal Atomic # 8 Polarization: -36.56 SS G_CDS: -2.76 Total: -39.32 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.85 Total: 46.40 kcal Total: -63.52 1.85 -61.67 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535810692.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.975 kcal (2) G-P(sol) polarization free energy of solvation -63.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds