Wall clock time and date at job start Mon Mar 30 2020 02:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.87321 * 2 1 4 4 O 1.43747 * 110.00165 * 238.91533 * 2 1 3 5 5 C 1.44377 * 106.97761 * 213.99354 * 4 2 1 6 6 C 1.54999 * 103.49032 * 40.05923 * 5 4 2 7 7 C 1.54099 * 109.87900 * 121.01311 * 2 1 3 8 8 H 1.09001 * 110.48527 * 240.40858 * 7 2 1 9 9 C 1.52996 * 110.48782 * 2.92357 * 7 2 1 10 10 H 1.09000 * 109.47122 * 306.23608 * 9 7 2 11 11 O 1.42899 * 109.47375 * 66.23821 * 9 7 2 12 12 C 1.50706 * 109.47228 * 186.23518 * 9 7 2 13 13 H 1.07996 * 119.99903 * 0.02562 * 12 9 7 14 14 C 1.37880 * 119.99928 * 179.72365 * 12 9 7 15 15 N 1.31513 * 119.99389 * 180.27607 * 14 12 9 16 16 Si 1.86799 * 120.00121 * 0.27798 * 14 12 9 17 17 H 1.48492 * 109.47052 * 89.99641 * 16 14 12 18 18 H 1.48503 * 109.46997 * 209.99968 * 16 14 12 19 19 H 1.48500 * 109.46860 * 329.99943 * 16 14 12 20 20 H 1.09001 * 109.46902 * 298.99132 * 1 2 3 21 21 H 1.08998 * 109.46860 * 58.98594 * 1 2 3 22 22 H 1.09003 * 109.47038 * 178.99348 * 1 2 3 23 23 H 1.08998 * 110.62347 * 158.55870 * 5 4 2 24 24 H 1.08998 * 110.62015 * 281.40390 * 5 4 2 25 25 H 1.09004 * 110.91177 * 204.77947 * 6 5 4 26 26 H 1.09003 * 110.90578 * 81.17415 * 6 5 4 27 27 H 0.96699 * 114.00482 * 67.31299 * 11 9 7 28 28 H 0.97005 * 119.99404 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 8 2.0217 -0.6974 -1.1568 5 6 3.2417 -1.3609 -0.7621 6 6 2.9227 -1.8883 0.6601 7 6 2.0540 -0.7467 1.2420 8 1 2.6579 -0.0822 1.8600 9 6 0.8901 -1.3195 2.0531 10 1 0.1807 -0.5243 2.2822 11 8 0.2354 -2.3375 1.2933 12 6 1.4147 -1.9099 3.3366 13 1 2.4724 -1.8792 3.5524 14 6 0.5435 -2.4837 4.2382 15 7 1.0008 -2.9941 5.3607 16 14 -1.2861 -2.5363 3.8652 17 1 -1.6068 -3.7895 3.1361 18 1 -2.0519 -2.4936 5.1368 19 1 -1.6540 -1.3676 3.0262 20 1 -0.3633 0.4981 0.8989 21 1 -0.3633 0.5295 -0.8807 22 1 -0.3633 -1.0275 -0.0181 23 1 3.4648 -2.1874 -1.4368 24 1 4.0714 -0.6545 -0.7349 25 1 3.8359 -2.0172 1.2412 26 1 2.3591 -2.8201 0.6120 27 1 0.7735 -3.1278 1.1487 28 1 0.3878 -3.3974 5.9952 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535810695.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:18 Heat of formation + Delta-G solvation = -98.351096 kcal Electronic energy + Delta-G solvation = -12261.657158 eV Core-core repulsion = 10084.717322 eV Total energy + Delta-G solvation = -2176.939835 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.40942 -35.94847 -32.30008 -31.61120 -30.91332 -27.51557 -25.04965 -22.43785 -21.54199 -18.82478 -17.44185 -15.90171 -15.50983 -14.87746 -14.80661 -14.24459 -13.66093 -13.00093 -12.53185 -12.12957 -11.77884 -11.27979 -11.24795 -10.91887 -10.72446 -10.55357 -10.25281 -10.06189 -9.74072 -9.30668 -9.02990 -8.68829 -8.34669 -6.16639 -4.27832 3.41620 3.45837 3.57965 4.36626 4.45939 5.12231 5.17978 5.38948 5.46321 5.57435 5.69187 5.79740 5.98582 6.05909 6.19432 6.32530 6.50591 6.54219 6.56594 6.80632 6.99896 7.33472 7.46808 7.55602 8.24669 8.80228 8.97586 9.46506 10.93774 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.056970 B = 0.015066 C = 0.013141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.370865 B = 1858.092856 C = 2130.294116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.079 3.921 3 H 0.051 0.949 4 O -0.380 6.380 5 C 0.045 3.955 6 C -0.137 4.137 7 C -0.132 4.132 8 H 0.078 0.922 9 C 0.199 3.801 10 H 0.066 0.934 11 O -0.579 6.579 12 C -0.560 4.560 13 H 0.073 0.927 14 C 0.079 3.921 15 N -0.893 5.893 16 Si 0.912 3.088 17 H -0.279 1.279 18 H -0.306 1.306 19 H -0.267 1.267 20 H 0.063 0.937 21 H 0.040 0.960 22 H 0.097 0.903 23 H 0.083 0.917 24 H 0.050 0.950 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.359 0.641 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.457 3.208 -8.860 9.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.022 3.978 3 H 0.069 0.931 4 O -0.300 6.300 5 C -0.032 4.032 6 C -0.174 4.174 7 C -0.152 4.152 8 H 0.097 0.903 9 C 0.142 3.858 10 H 0.084 0.916 11 O -0.388 6.388 12 C -0.598 4.598 13 H 0.092 0.908 14 C -0.125 4.125 15 N -0.530 5.530 16 Si 0.742 3.258 17 H -0.205 1.205 18 H -0.234 1.234 19 H -0.192 1.192 20 H 0.082 0.918 21 H 0.059 0.941 22 H 0.116 0.884 23 H 0.101 0.899 24 H 0.068 0.932 25 H 0.092 0.908 26 H 0.097 0.903 27 H 0.208 0.792 28 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.841 3.567 -8.906 9.630 hybrid contribution -0.173 -0.390 0.292 0.517 sum 0.668 3.178 -8.614 9.206 Atomic orbital electron populations 1.22239 0.93897 1.05244 1.00289 1.22742 0.95481 0.94319 0.85249 0.93108 1.88804 1.39355 1.67966 1.33866 1.23501 0.87613 0.95810 0.96266 1.22991 1.00148 0.99623 0.94660 1.23117 0.99076 0.96827 0.96136 0.90335 1.19897 0.89585 0.87961 0.88377 0.91612 1.86362 1.47081 1.29533 1.75787 1.21586 0.96250 1.39764 1.02171 0.90841 1.25067 0.99822 0.93534 0.94106 1.69961 1.35879 1.37902 1.09255 0.86270 0.83974 0.79750 0.75816 1.20451 1.23412 1.19155 0.91792 0.94078 0.88425 0.89866 0.93167 0.90839 0.90298 0.79179 0.92533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 8.36 37.16 0.31 -2.59 15 2 C 0.08 1.44 4.01 -26.16 -0.10 1.33 15 3 H 0.05 0.85 8.14 -51.93 -0.42 0.43 15 4 O -0.38 -6.93 11.19 -35.23 -0.39 -7.33 15 5 C 0.04 0.69 7.72 38.21 0.29 0.99 15 6 C -0.14 -2.38 6.27 -24.72 -0.16 -2.53 15 7 C -0.13 -2.57 2.83 -89.09 -0.25 -2.82 15 8 H 0.08 1.53 8.14 -51.93 -0.42 1.10 15 9 C 0.20 4.51 1.40 -27.88 -0.04 4.47 15 10 H 0.07 1.56 5.38 -51.93 -0.28 1.28 15 11 O -0.58 -12.79 8.23 -35.23 -0.29 -13.08 15 12 C -0.56 -15.09 8.97 -34.44 -0.31 -15.40 15 13 H 0.07 2.13 7.99 -52.49 -0.42 1.71 15 14 C 0.08 2.24 5.47 -17.82 -0.10 2.14 15 15 N -0.89 -26.78 13.96 55.43 0.77 -26.01 15 16 Si 0.91 22.80 26.19 -169.99 -4.45 18.35 15 17 H -0.28 -6.96 7.11 56.52 0.40 -6.56 15 18 H -0.31 -7.66 7.11 56.52 0.40 -7.25 15 19 H -0.27 -6.55 6.54 56.52 0.37 -6.18 15 20 H 0.06 1.15 6.70 -51.93 -0.35 0.80 15 21 H 0.04 0.67 8.14 -51.93 -0.42 0.24 15 22 H 0.10 1.95 5.49 -51.93 -0.29 1.66 15 23 H 0.08 1.12 8.14 -51.93 -0.42 0.69 15 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 15 25 H 0.07 1.24 8.14 -51.93 -0.42 0.81 15 26 H 0.08 1.40 5.73 -51.93 -0.30 1.10 15 27 H 0.36 7.32 6.84 45.56 0.31 7.64 15 28 H 0.27 7.49 8.31 -40.82 -0.34 7.16 15 LS Contribution 220.62 15.07 3.32 3.32 Total: -1.00 -29.82 220.62 -4.41 -34.23 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -3.02 Total: 4.92 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: -0.35 Total: -14.41 kcal Atomic # 7 Polarization: -26.78 SS G_CDS: 0.77 Total: -26.01 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.68 Total: -20.40 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -4.45 Total: 18.35 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -29.82 -4.41 -34.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535810695.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.121 kcal (2) G-P(sol) polarization free energy of solvation -29.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds