Wall clock time and date at job start Mon Mar 30 2020 02:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.87321 * 2 1 4 4 O 1.43747 * 110.00165 * 238.91533 * 2 1 3 5 5 C 1.44377 * 106.97761 * 213.99354 * 4 2 1 6 6 C 1.54999 * 103.49032 * 40.05923 * 5 4 2 7 7 C 1.54099 * 109.87900 * 121.01311 * 2 1 3 8 8 H 1.09001 * 110.48527 * 240.40858 * 7 2 1 9 9 C 1.52996 * 110.48782 * 2.92357 * 7 2 1 10 10 H 1.09000 * 109.47122 * 306.23608 * 9 7 2 11 11 O 1.42899 * 109.47375 * 66.23821 * 9 7 2 12 12 C 1.50706 * 109.47228 * 186.23518 * 9 7 2 13 13 H 1.07996 * 119.99903 * 0.02562 * 12 9 7 14 14 C 1.37880 * 119.99928 * 179.72365 * 12 9 7 15 15 N 1.31513 * 119.99389 * 180.27607 * 14 12 9 16 16 Si 1.86799 * 120.00121 * 0.27798 * 14 12 9 17 17 H 1.48492 * 109.47052 * 89.99641 * 16 14 12 18 18 H 1.48503 * 109.46997 * 209.99968 * 16 14 12 19 19 H 1.48500 * 109.46860 * 329.99943 * 16 14 12 20 20 H 1.09001 * 109.46902 * 298.99132 * 1 2 3 21 21 H 1.08998 * 109.46860 * 58.98594 * 1 2 3 22 22 H 1.09003 * 109.47038 * 178.99348 * 1 2 3 23 23 H 1.08998 * 110.62347 * 158.55870 * 5 4 2 24 24 H 1.08998 * 110.62015 * 281.40390 * 5 4 2 25 25 H 1.09004 * 110.91177 * 204.77947 * 6 5 4 26 26 H 1.09003 * 110.90578 * 81.17415 * 6 5 4 27 27 H 0.96699 * 114.00482 * 67.31299 * 11 9 7 28 28 H 0.97005 * 119.99404 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 8 2.0217 -0.6974 -1.1568 5 6 3.2417 -1.3609 -0.7621 6 6 2.9227 -1.8883 0.6601 7 6 2.0540 -0.7467 1.2420 8 1 2.6579 -0.0822 1.8600 9 6 0.8901 -1.3195 2.0531 10 1 0.1807 -0.5243 2.2822 11 8 0.2354 -2.3375 1.2933 12 6 1.4147 -1.9099 3.3366 13 1 2.4724 -1.8792 3.5524 14 6 0.5435 -2.4837 4.2382 15 7 1.0008 -2.9941 5.3607 16 14 -1.2861 -2.5363 3.8652 17 1 -1.6068 -3.7895 3.1361 18 1 -2.0519 -2.4936 5.1368 19 1 -1.6540 -1.3676 3.0262 20 1 -0.3633 0.4981 0.8989 21 1 -0.3633 0.5295 -0.8807 22 1 -0.3633 -1.0275 -0.0181 23 1 3.4648 -2.1874 -1.4368 24 1 4.0714 -0.6545 -0.7349 25 1 3.8359 -2.0172 1.2412 26 1 2.3591 -2.8201 0.6120 27 1 0.7735 -3.1278 1.1487 28 1 0.3878 -3.3974 5.9952 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535810695.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:18 Heat of formation + Delta-G solvation = -120.401322 kcal Electronic energy + Delta-G solvation = -12262.613327 eV Core-core repulsion = 10084.717322 eV Total energy + Delta-G solvation = -2177.896005 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.87943 -37.64509 -34.44134 -33.16180 -32.29045 -29.38252 -26.58713 -24.21992 -22.91897 -20.42333 -19.43087 -17.37750 -17.19169 -16.63415 -16.28353 -15.88285 -15.38253 -14.86982 -14.22797 -13.69300 -13.29345 -13.02464 -12.91032 -12.72180 -12.39935 -12.06351 -11.76069 -11.67202 -11.53863 -10.93814 -10.85845 -10.67950 -10.09727 -8.35529 -6.48880 1.41635 1.43786 1.58589 2.37467 2.99045 3.04521 3.71986 3.91005 3.99351 4.14735 4.26961 4.40289 4.60637 4.77077 4.82797 4.87860 5.01980 5.08980 5.12636 5.29933 5.40583 5.55759 5.69830 6.07757 6.11465 6.64232 7.14826 7.31068 8.78501 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.056970 B = 0.015066 C = 0.013141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.370865 B = 1858.092856 C = 2130.294116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.083 3.917 3 H 0.069 0.931 4 O -0.393 6.393 5 C 0.049 3.951 6 C -0.138 4.138 7 C -0.135 4.135 8 H 0.074 0.926 9 C 0.207 3.793 10 H 0.060 0.940 11 O -0.578 6.578 12 C -0.556 4.556 13 H 0.042 0.958 14 C 0.028 3.972 15 N -0.938 5.938 16 Si 0.970 3.030 17 H -0.276 1.276 18 H -0.306 1.306 19 H -0.258 1.258 20 H 0.061 0.939 21 H 0.059 0.941 22 H 0.079 0.921 23 H 0.107 0.893 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.367 0.633 28 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.138 3.736 -10.520 11.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.026 3.974 3 H 0.087 0.913 4 O -0.313 6.313 5 C -0.027 4.027 6 C -0.176 4.176 7 C -0.154 4.154 8 H 0.093 0.907 9 C 0.150 3.850 10 H 0.078 0.922 11 O -0.387 6.387 12 C -0.594 4.594 13 H 0.060 0.940 14 C -0.172 4.172 15 N -0.578 5.578 16 Si 0.798 3.202 17 H -0.201 1.201 18 H -0.235 1.235 19 H -0.182 1.182 20 H 0.080 0.920 21 H 0.078 0.922 22 H 0.097 0.903 23 H 0.125 0.875 24 H 0.088 0.912 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.217 0.783 28 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.532 4.099 -10.584 11.363 hybrid contribution 0.009 -0.560 0.804 0.979 sum 0.540 3.539 -9.781 10.415 Atomic orbital electron populations 1.22191 0.94046 1.04242 1.01103 1.22704 0.95427 0.94931 0.84350 0.91292 1.88790 1.40499 1.68241 1.33775 1.23642 0.87185 0.96801 0.95058 1.22992 0.99742 0.98662 0.96185 1.23039 0.98086 0.97705 0.96594 0.90743 1.19695 0.90542 0.87624 0.87174 0.92220 1.86334 1.47191 1.29878 1.75267 1.21885 0.94801 1.38861 1.03811 0.93974 1.25828 1.03801 0.93577 0.94000 1.70073 1.37312 1.39796 1.10584 0.85351 0.79337 0.79973 0.75585 1.20127 1.23473 1.18214 0.92016 0.92242 0.90256 0.87529 0.91243 0.90733 0.90943 0.78303 0.92423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.37 8.36 71.98 0.60 -4.77 15 2 C 0.08 2.79 4.01 30.97 0.12 2.91 15 3 H 0.07 2.08 8.14 -2.39 -0.02 2.07 15 4 O -0.39 -13.08 11.19 -148.98 -1.67 -14.75 15 5 C 0.05 1.36 7.72 72.67 0.56 1.92 15 6 C -0.14 -4.56 6.27 31.90 0.20 -4.36 15 7 C -0.14 -5.04 2.83 -9.81 -0.03 -5.07 15 8 H 0.07 2.81 8.14 -2.39 -0.02 2.79 15 9 C 0.21 9.18 1.40 29.85 0.04 9.22 15 10 H 0.06 2.75 5.38 -2.39 -0.01 2.74 15 11 O -0.58 -24.57 8.23 -148.98 -1.23 -25.79 15 12 C -0.56 -30.06 8.97 25.60 0.23 -29.83 15 13 H 0.04 2.50 7.99 -2.91 -0.02 2.47 15 14 C 0.03 1.57 5.47 84.66 0.46 2.03 15 15 N -0.94 -57.12 13.96 21.45 0.30 -56.82 15 16 Si 0.97 46.66 26.19 68.60 1.80 48.46 15 17 H -0.28 -13.05 7.11 99.48 0.71 -12.34 15 18 H -0.31 -14.68 7.11 99.48 0.71 -13.98 15 19 H -0.26 -11.93 6.54 99.48 0.65 -11.28 15 20 H 0.06 2.08 6.70 -2.39 -0.02 2.06 15 21 H 0.06 1.76 8.14 -2.39 -0.02 1.74 15 22 H 0.08 2.99 5.49 -2.39 -0.01 2.98 15 23 H 0.11 2.46 8.14 -2.39 -0.02 2.44 15 24 H 0.07 1.68 8.14 -2.39 -0.02 1.66 15 25 H 0.07 2.42 8.14 -2.39 -0.02 2.40 15 26 H 0.07 2.46 5.73 -2.39 -0.01 2.45 15 27 H 0.37 14.45 6.84 -74.06 -0.51 13.95 15 28 H 0.27 15.31 8.31 -92.70 -0.77 14.54 15 Total: -1.00 -62.15 220.62 1.99 -60.16 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 0.59 Total: 16.68 kcal Atomic # 6 Polarization: -30.13 SS G_CDS: 2.19 Total: -27.94 kcal Atomic # 7 Polarization: -57.12 SS G_CDS: 0.30 Total: -56.82 kcal Atomic # 8 Polarization: -37.65 SS G_CDS: -2.89 Total: -40.54 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 1.80 Total: 48.46 kcal Total: -62.15 1.99 -60.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535810695.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.242 kcal (2) G-P(sol) polarization free energy of solvation -62.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds