Wall clock time and date at job start Mon Mar 30 2020 02:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.89605 * 2 1 4 4 O 1.43235 * 109.83049 * 239.06155 * 2 1 3 5 5 C 1.43645 * 109.97529 * 242.19979 * 4 2 1 6 6 C 1.54944 * 105.22260 * 335.52671 * 5 4 2 7 7 C 1.54383 * 109.82711 * 120.93407 * 2 1 3 8 8 H 1.09000 * 110.84920 * 22.67681 * 7 2 1 9 9 C 1.53003 * 110.84752 * 259.26307 * 7 2 1 10 10 H 1.09007 * 109.46866 * 300.00275 * 9 7 2 11 11 O 1.42904 * 109.46880 * 59.99869 * 9 7 2 12 12 C 1.50701 * 109.47247 * 180.02562 * 9 7 2 13 13 H 1.07996 * 119.99868 * 359.97438 * 12 9 7 14 14 C 1.37881 * 119.99762 * 180.02562 * 12 9 7 15 15 N 1.31510 * 119.99875 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 119.99588 * 179.97438 * 14 12 9 17 17 H 1.48504 * 109.46991 * 90.00163 * 16 14 12 18 18 H 1.48502 * 109.47110 * 209.99702 * 16 14 12 19 19 H 1.48493 * 109.47340 * 329.99896 * 16 14 12 20 20 H 1.09006 * 109.47327 * 179.47905 * 1 2 3 21 21 H 1.08998 * 109.47323 * 299.48341 * 1 2 3 22 22 H 1.09003 * 109.47031 * 59.48248 * 1 2 3 23 23 H 1.09002 * 110.30923 * 94.49115 * 5 4 2 24 24 H 1.09000 * 110.31166 * 216.56243 * 5 4 2 25 25 H 1.08997 * 111.13230 * 154.41072 * 6 5 4 26 26 H 1.09003 * 111.12649 * 278.57419 * 6 5 4 27 27 H 0.96700 * 114.00169 * 60.00402 * 11 9 7 28 28 H 0.97006 * 119.99889 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9009 1.0249 0.0000 4 8 2.0159 -0.6927 -1.1557 5 6 2.7747 -1.8445 -0.7545 6 6 3.2751 -1.5238 0.6764 7 6 2.0536 -0.7466 1.2457 8 1 1.3011 -1.4349 1.6303 9 6 2.4889 0.2416 2.3298 10 1 3.2841 0.8788 1.9424 11 8 1.3745 1.0500 2.7125 12 6 2.9942 -0.5186 3.5289 13 1 3.0035 -1.5985 3.5190 14 6 3.4436 0.1646 4.6390 15 7 3.4317 1.4796 4.6512 16 14 4.0692 -0.7777 6.1256 17 1 5.5291 -1.0108 5.9855 18 1 3.8099 0.0111 7.3568 19 1 3.3661 -2.0825 6.2165 20 1 -0.3634 -1.0277 -0.0093 21 1 -0.3634 0.5058 0.8946 22 1 -0.3633 0.5219 -0.8853 23 1 2.1400 -2.7307 -0.7436 24 1 3.6200 -1.9936 -1.4263 25 1 3.4601 -2.4371 1.2420 26 1 4.1641 -0.8937 0.6497 27 1 0.6278 0.5482 3.0672 28 1 3.7483 1.9603 5.4320 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535810697.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:19 Heat of formation + Delta-G solvation = -134.284228 kcal Electronic energy + Delta-G solvation = -11982.477907 eV Core-core repulsion = 9803.979895 eV Total energy + Delta-G solvation = -2178.498013 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.60991 -37.46027 -34.26929 -33.20799 -32.25381 -29.06863 -26.74122 -23.95400 -22.39367 -21.45796 -18.91366 -17.69981 -16.90699 -16.63202 -15.99173 -15.41182 -15.01382 -14.54580 -14.36136 -13.68226 -13.18368 -13.11894 -12.89086 -12.78589 -12.63113 -12.15640 -12.11105 -11.67830 -11.46155 -10.95094 -10.68459 -10.42284 -10.08547 -8.12305 -6.37071 1.40916 1.41715 1.52005 2.39424 2.97955 3.13955 3.71076 3.93260 4.07053 4.31473 4.34443 4.44954 4.59100 4.77930 4.79500 4.82674 5.03007 5.12666 5.18367 5.31758 5.35784 5.64841 5.78310 6.10147 6.15771 6.74265 7.34877 7.55575 8.92214 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.056997 B = 0.012368 C = 0.010920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.133547 B = 2263.297071 C = 2563.484077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.083 3.917 3 H 0.054 0.946 4 O -0.404 6.404 5 C 0.052 3.948 6 C -0.137 4.137 7 C -0.131 4.131 8 H 0.080 0.920 9 C 0.242 3.758 10 H 0.016 0.984 11 O -0.578 6.578 12 C -0.575 4.575 13 H 0.063 0.937 14 C 0.023 3.977 15 N -0.902 5.902 16 Si 0.958 3.042 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.263 1.263 20 H 0.063 0.937 21 H 0.070 0.930 22 H 0.061 0.939 23 H 0.072 0.928 24 H 0.098 0.902 25 H 0.088 0.912 26 H 0.060 0.940 27 H 0.357 0.643 28 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.816 -6.793 -6.119 9.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.025 3.975 3 H 0.072 0.928 4 O -0.324 6.324 5 C -0.024 4.024 6 C -0.174 4.174 7 C -0.150 4.150 8 H 0.099 0.901 9 C 0.184 3.816 10 H 0.033 0.967 11 O -0.382 6.382 12 C -0.613 4.613 13 H 0.081 0.919 14 C -0.179 4.179 15 N -0.540 5.540 16 Si 0.783 3.217 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.187 1.187 20 H 0.082 0.918 21 H 0.089 0.911 22 H 0.080 0.920 23 H 0.090 0.910 24 H 0.116 0.884 25 H 0.106 0.894 26 H 0.078 0.922 27 H 0.202 0.798 28 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.422 -6.090 -6.453 9.197 hybrid contribution 0.255 -0.532 1.344 1.467 sum -2.167 -6.622 -5.109 8.639 Atomic orbital electron populations 1.22025 0.93536 1.02445 1.02479 1.22672 0.95355 0.95157 0.84273 0.92837 1.88309 1.71414 1.41404 1.31287 1.23507 0.95349 0.88552 0.95021 1.23113 0.97669 1.00782 0.95875 1.23398 0.97910 0.98018 0.95676 0.90125 1.19148 0.84538 0.87408 0.90471 0.96659 1.86515 1.27676 1.39131 1.84885 1.22010 1.44451 0.93553 1.01276 0.91906 1.25920 0.94825 0.95468 1.01724 1.70219 1.45635 1.07882 1.30258 0.85583 0.78738 0.78847 0.78548 1.20064 1.21206 1.18667 0.91786 0.91082 0.91966 0.90953 0.88368 0.89373 0.92154 0.79824 0.93099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.60 9.43 71.98 0.68 -3.92 15 2 C 0.08 3.07 3.48 31.06 0.11 3.18 15 3 H 0.05 2.25 7.81 -2.39 -0.02 2.23 15 4 O -0.40 -14.36 11.02 -148.98 -1.64 -16.00 15 5 C 0.05 1.52 7.77 72.65 0.56 2.09 15 6 C -0.14 -4.79 6.21 32.14 0.20 -4.59 15 7 C -0.13 -5.17 2.19 -9.44 -0.02 -5.19 15 8 H 0.08 3.04 7.85 -2.39 -0.02 3.02 15 9 C 0.24 12.09 2.22 29.85 0.07 12.16 15 10 H 0.02 0.89 8.11 -2.38 -0.02 0.87 15 11 O -0.58 -29.18 11.80 -148.98 -1.76 -30.94 15 12 C -0.58 -30.56 8.36 25.60 0.21 -30.34 15 13 H 0.06 3.19 7.72 -2.91 -0.02 3.16 15 14 C 0.02 1.25 5.40 84.66 0.46 1.70 15 15 N -0.90 -53.70 12.84 21.45 0.28 -53.43 15 16 Si 0.96 42.68 29.54 68.60 2.03 44.71 15 17 H -0.28 -11.97 7.11 99.48 0.71 -11.26 15 18 H -0.29 -12.70 7.11 99.48 0.71 -11.99 15 19 H -0.26 -11.12 7.11 99.48 0.71 -10.41 15 20 H 0.06 1.80 8.14 -2.38 -0.02 1.78 15 21 H 0.07 2.24 7.49 -2.39 -0.02 2.22 15 22 H 0.06 1.78 8.14 -2.39 -0.02 1.76 15 23 H 0.07 1.85 8.14 -2.39 -0.02 1.83 15 24 H 0.10 2.45 8.14 -2.39 -0.02 2.43 15 25 H 0.09 2.87 8.14 -2.39 -0.02 2.85 15 26 H 0.06 2.29 8.02 -2.39 -0.02 2.27 15 27 H 0.36 15.72 9.01 -74.06 -0.67 15.05 15 28 H 0.26 14.70 8.31 -92.70 -0.77 13.92 15 Total: -1.00 -62.46 236.61 1.64 -60.83 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: 0.47 Total: 19.75 kcal Atomic # 6 Polarization: -27.19 SS G_CDS: 2.27 Total: -24.92 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: 0.28 Total: -53.43 kcal Atomic # 8 Polarization: -43.54 SS G_CDS: -3.40 Total: -46.94 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -62.46 1.64 -60.83 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535810697.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.458 kcal (2) G-P(sol) polarization free energy of solvation -62.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds