Wall clock time and date at job start Mon Mar 30 2020 02:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.89487 * 2 1 4 4 O 1.43233 * 109.83304 * 239.06633 * 2 1 3 5 5 C 1.43650 * 109.97571 * 242.19796 * 4 2 1 6 6 C 1.54949 * 105.13119 * 335.57424 * 5 4 2 7 7 C 1.54386 * 109.83018 * 120.93125 * 2 1 3 8 8 H 1.09002 * 111.01984 * 22.60438 * 7 2 1 9 9 C 1.52998 * 110.84614 * 259.06173 * 7 2 1 10 10 H 1.09004 * 109.47139 * 65.71598 * 9 7 2 11 11 O 1.42897 * 109.47508 * 305.71284 * 9 7 2 12 12 C 1.50699 * 109.46700 * 185.71221 * 9 7 2 13 13 H 1.07999 * 120.00803 * 0.02562 * 12 9 7 14 14 C 1.37881 * 119.99889 * 180.02562 * 12 9 7 15 15 N 1.31520 * 120.00186 * 180.02562 * 14 12 9 16 16 Si 1.86798 * 120.00030 * 0.02562 * 14 12 9 17 17 H 1.48506 * 109.47297 * 89.99863 * 16 14 12 18 18 H 1.48503 * 109.47261 * 330.00044 * 16 14 12 19 19 H 1.48500 * 109.47454 * 210.00037 * 16 14 12 20 20 H 1.08995 * 109.47428 * 299.06725 * 1 2 3 21 21 H 1.09001 * 109.46940 * 59.06939 * 1 2 3 22 22 H 1.09001 * 109.46820 * 179.06328 * 1 2 3 23 23 H 1.08997 * 110.31319 * 216.66099 * 5 4 2 24 24 H 1.09001 * 110.31181 * 94.48126 * 5 4 2 25 25 H 1.09006 * 111.12303 * 278.52223 * 6 5 4 26 26 H 1.08999 * 111.16486 * 154.37718 * 6 5 4 27 27 H 0.96698 * 113.99935 * 300.00528 * 11 9 7 28 28 H 0.96998 * 120.00124 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9009 1.0250 0.0000 4 8 2.0160 -0.6926 -1.1557 5 6 2.7748 -1.8444 -0.7546 6 6 3.2730 -1.5221 0.6768 7 6 2.0537 -0.7465 1.2458 8 1 1.3027 -1.4348 1.6336 9 6 2.4936 0.2417 2.3277 10 1 1.6258 0.7912 2.6926 11 8 3.4416 1.1590 1.7782 12 6 3.1271 -0.5119 3.4687 13 1 3.2082 -1.5880 3.4263 14 6 3.6031 0.1725 4.5670 15 7 4.1564 -0.4852 5.5626 16 14 3.4622 2.0336 4.6409 17 1 2.1735 2.4077 5.2771 18 1 3.5143 2.5891 3.2647 19 1 4.5867 2.5839 5.4396 20 1 -0.3634 0.4992 0.8982 21 1 -0.3633 0.5282 -0.8815 22 1 -0.3633 -1.0276 -0.0168 23 1 3.6211 -1.9924 -1.4253 24 1 2.1402 -2.7306 -0.7436 25 1 4.1621 -0.8920 0.6507 26 1 3.4577 -2.4344 1.2440 27 1 4.2413 0.7387 1.4334 28 1 4.4909 -0.0038 6.3353 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535810700.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:21 Heat of formation + Delta-G solvation = -127.600514 kcal Electronic energy + Delta-G solvation = -12089.643346 eV Core-core repulsion = 9911.435161 eV Total energy + Delta-G solvation = -2178.208185 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.76363 -37.66490 -34.41400 -33.18829 -32.26958 -29.49485 -26.79441 -24.09624 -22.36091 -21.10943 -19.16160 -17.89664 -16.97432 -16.73312 -16.00940 -15.47594 -15.19160 -14.74217 -14.50212 -13.80780 -13.58374 -13.19328 -12.95958 -12.77892 -12.57495 -12.20536 -11.68219 -11.62774 -11.57919 -10.94552 -10.79131 -10.39450 -10.15312 -8.33574 -6.47074 1.39600 1.45839 1.74746 2.44088 2.98335 3.04123 3.64740 3.89279 3.99965 4.15101 4.35927 4.37067 4.52067 4.72885 4.75984 4.81500 4.98200 5.09494 5.14993 5.26835 5.34279 5.51423 5.56485 6.11332 6.15969 6.65403 7.14651 7.34279 8.80235 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.056172 B = 0.013639 C = 0.012424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.349182 B = 2052.430853 C = 2253.078856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.078 3.922 3 H 0.079 0.921 4 O -0.399 6.399 5 C 0.053 3.947 6 C -0.138 4.138 7 C -0.129 4.129 8 H 0.077 0.923 9 C 0.208 3.792 10 H 0.054 0.946 11 O -0.581 6.581 12 C -0.554 4.554 13 H 0.042 0.958 14 C 0.026 3.974 15 N -0.940 5.940 16 Si 0.933 3.067 17 H -0.285 1.285 18 H -0.205 1.205 19 H -0.300 1.300 20 H 0.069 0.931 21 H 0.067 0.933 22 H 0.059 0.941 23 H 0.099 0.901 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.365 0.635 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.010 0.725 -10.793 11.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.021 3.979 3 H 0.096 0.904 4 O -0.319 6.319 5 C -0.023 4.023 6 C -0.176 4.176 7 C -0.148 4.148 8 H 0.095 0.905 9 C 0.150 3.850 10 H 0.072 0.928 11 O -0.389 6.389 12 C -0.592 4.592 13 H 0.060 0.940 14 C -0.173 4.173 15 N -0.580 5.580 16 Si 0.758 3.242 17 H -0.212 1.212 18 H -0.127 1.127 19 H -0.227 1.227 20 H 0.088 0.912 21 H 0.086 0.914 22 H 0.078 0.922 23 H 0.118 0.882 24 H 0.083 0.917 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.214 0.786 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.432 1.224 -10.694 11.641 hybrid contribution 0.575 -0.115 0.924 1.095 sum -3.857 1.108 -9.770 10.562 Atomic orbital electron populations 1.22094 0.94079 1.02560 1.02582 1.22772 0.94822 0.96398 0.83914 0.90360 1.88320 1.71344 1.41167 1.31057 1.23463 0.95300 0.88514 0.95022 1.23083 0.98177 1.00690 0.95631 1.23189 0.97936 0.97942 0.95738 0.90458 1.19479 0.88822 0.87293 0.89400 0.92785 1.86611 1.32725 1.38528 1.80999 1.21791 1.40118 0.94452 1.02799 0.93957 1.25855 0.93219 1.03686 0.94558 1.70080 1.40867 1.38361 1.08671 0.86072 0.76667 0.80698 0.80810 1.21201 1.12667 1.22665 0.91232 0.91369 0.92164 0.88245 0.91689 0.90784 0.90877 0.78604 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.35 9.44 71.98 0.68 -3.67 15 2 C 0.08 2.58 3.65 31.06 0.11 2.69 15 3 H 0.08 2.76 7.03 -2.39 -0.02 2.74 15 4 O -0.40 -13.02 11.02 -148.98 -1.64 -14.66 15 5 C 0.05 1.50 7.78 72.65 0.57 2.06 15 6 C -0.14 -4.63 5.82 32.05 0.19 -4.44 15 7 C -0.13 -4.75 2.42 -9.53 -0.02 -4.78 15 8 H 0.08 2.88 7.86 -2.39 -0.02 2.86 15 9 C 0.21 9.16 2.21 29.85 0.07 9.22 15 10 H 0.05 2.44 7.57 -2.39 -0.02 2.42 15 11 O -0.58 -24.60 9.06 -148.98 -1.35 -25.95 15 12 C -0.55 -29.87 8.83 25.60 0.23 -29.64 15 13 H 0.04 2.50 7.67 -2.91 -0.02 2.47 15 14 C 0.03 1.49 5.47 84.65 0.46 1.95 15 15 N -0.94 -57.59 13.96 21.45 0.30 -57.29 15 16 Si 0.93 44.37 26.99 68.60 1.85 46.22 15 17 H -0.29 -13.41 7.11 99.48 0.71 -12.70 15 18 H -0.20 -9.25 5.31 99.48 0.53 -8.72 15 19 H -0.30 -14.36 7.11 99.48 0.71 -13.65 15 20 H 0.07 1.88 8.14 -2.39 -0.02 1.86 15 21 H 0.07 1.71 8.14 -2.39 -0.02 1.69 15 22 H 0.06 1.60 8.14 -2.39 -0.02 1.58 15 23 H 0.10 2.36 8.14 -2.39 -0.02 2.34 15 24 H 0.06 1.67 8.14 -2.39 -0.02 1.65 15 25 H 0.07 2.49 6.19 -2.38 -0.01 2.47 15 26 H 0.07 2.54 8.02 -2.39 -0.02 2.52 15 27 H 0.37 14.02 7.07 -74.06 -0.52 13.50 15 28 H 0.27 15.36 8.31 -92.71 -0.77 14.59 15 Total: -1.00 -62.54 226.61 1.88 -60.66 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: 0.44 Total: 17.63 kcal Atomic # 6 Polarization: -28.89 SS G_CDS: 2.28 Total: -26.61 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: 0.30 Total: -57.29 kcal Atomic # 8 Polarization: -37.62 SS G_CDS: -2.99 Total: -40.61 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.85 Total: 46.22 kcal Total: -62.54 1.88 -60.66 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535810700.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.937 kcal (2) G-P(sol) polarization free energy of solvation -62.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds