Wall clock time and date at job start Mon Mar 30 2020 01:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39556 * 120.14159 * 92.91655 * 3 2 1 5 5 C 1.37946 * 119.85462 * 179.97438 * 4 3 2 6 6 C 1.38371 * 120.14546 * 0.02562 * 5 4 3 7 7 C 1.38322 * 120.28253 * 0.02562 * 6 5 4 8 8 C 1.37992 * 120.14666 * 359.68983 * 7 6 5 9 9 C 1.50703 * 120.07882 * 180.27907 * 8 7 6 10 10 C 1.50696 * 109.47301 * 265.30317 * 9 8 7 11 11 H 1.08000 * 119.99986 * 359.97438 * 10 9 8 12 12 C 1.37875 * 119.99856 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00138 * 180.02562 * 12 10 9 14 14 Si 1.86804 * 120.00082 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.46958 * 89.99768 * 14 12 10 16 16 H 1.48491 * 109.47409 * 209.99869 * 14 12 10 17 17 H 1.48503 * 109.47224 * 330.00180 * 14 12 10 18 18 H 4.52083 * 14.01991 * 0.02562 * 4 2 1 19 19 H 1.07994 * 120.07089 * 359.95316 * 4 3 2 20 20 H 1.08005 * 119.93031 * 180.02562 * 5 4 3 21 21 H 1.08002 * 119.86212 * 179.97438 * 6 5 4 22 22 H 1.08005 * 119.93099 * 179.97438 * 7 6 5 23 23 H 1.08994 * 109.46589 * 25.30514 * 9 8 7 24 24 H 1.08997 * 109.46615 * 145.29847 * 9 8 7 25 25 H 0.96999 * 120.00219 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3067 0.0624 -1.2053 5 6 4.6862 0.0632 -1.1984 6 6 5.3751 0.0024 0.0001 7 6 4.6864 -0.0600 1.1981 8 6 3.3066 -0.0556 1.2053 9 6 2.5579 -0.1173 2.5117 10 6 2.2024 -1.5490 2.8199 11 1 2.4896 -2.3355 2.1378 12 6 1.5107 -1.8547 3.9727 13 7 1.2009 -3.1041 4.2420 14 14 1.0134 -0.4941 5.1523 15 1 -0.3292 0.0187 4.7786 16 1 0.9709 -1.0300 6.5365 17 1 2.0032 0.6106 5.0793 18 1 -1.0500 0.0005 0.0001 19 1 2.7702 0.1090 -2.1414 20 1 5.2297 0.1113 -2.1304 21 1 6.4551 0.0029 0.0002 22 1 5.2299 -0.1077 2.1302 23 1 3.1852 0.2811 3.3091 24 1 1.6462 0.4753 2.4363 25 1 0.7139 -3.3191 5.0529 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535845313.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:36 Heat of formation + Delta-G solvation = 67.966689 kcal Electronic energy + Delta-G solvation = -10298.779279 eV Core-core repulsion = 8436.360444 eV Total energy + Delta-G solvation = -1862.418835 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 186.074 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.81491 -33.66678 -32.90348 -31.39865 -29.62415 -27.59179 -23.18820 -22.54931 -20.40871 -18.12701 -16.77292 -15.72032 -14.78524 -14.69472 -14.13052 -13.15769 -12.95446 -12.59125 -12.14519 -11.77567 -11.31249 -10.91119 -10.56032 -10.41443 -10.22903 -10.04448 -9.66834 -9.34989 -8.56861 -8.20493 -7.74766 -6.06147 -4.04655 1.53327 1.98214 3.29017 3.36233 3.39207 3.45849 3.65137 4.42306 4.61712 4.93100 5.25135 5.38609 5.45344 5.59324 5.92224 6.11294 6.19075 6.52406 6.62829 6.89955 6.92725 7.00779 7.02772 7.49197 7.50504 7.69954 8.23961 8.49891 8.98494 9.53933 11.06938 Molecular weight = 186.07amu Principal moments of inertia in cm(-1) A = 0.042597 B = 0.012862 C = 0.011281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.164219 B = 2176.364873 C = 2481.451495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 C 0.000 4.000 4 C -0.100 4.100 5 C -0.147 4.147 6 C -0.113 4.113 7 C -0.125 4.125 8 C -0.007 4.007 9 C 0.013 3.987 10 C -0.506 4.506 11 H 0.073 0.927 12 C 0.071 3.929 13 N -0.900 5.900 14 Si 0.875 3.125 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.265 1.265 18 H 0.217 0.783 19 H 0.117 0.883 20 H 0.117 0.883 21 H 0.116 0.884 22 H 0.124 0.876 23 H 0.029 0.971 24 H 0.026 0.974 25 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.745 7.480 -7.498 11.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.118 4.118 3 C 0.000 4.000 4 C -0.118 4.118 5 C -0.165 4.165 6 C -0.131 4.131 7 C -0.143 4.143 8 C -0.007 4.007 9 C -0.024 4.024 10 C -0.544 4.544 11 H 0.091 0.909 12 C -0.131 4.131 13 N -0.538 5.538 14 Si 0.702 3.298 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.190 1.190 18 H 0.234 0.766 19 H 0.135 0.865 20 H 0.135 0.865 21 H 0.134 0.866 22 H 0.142 0.858 23 H 0.047 0.953 24 H 0.045 0.955 25 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.665 7.360 -7.358 11.034 hybrid contribution -0.535 0.445 0.706 0.992 sum 3.129 7.805 -6.652 10.722 Atomic orbital electron populations 1.24588 0.95580 1.00659 1.00861 1.19863 0.91931 1.00250 0.99753 1.15918 0.86827 1.04024 0.93253 1.21053 0.94138 1.00047 0.96533 1.20825 0.93806 1.04148 0.97741 1.21149 0.99365 0.99927 0.92643 1.21010 0.93672 1.01575 0.98039 1.20416 0.93430 0.91287 0.95523 1.18849 0.95076 0.98929 0.89594 1.20835 1.36080 0.90506 1.07012 0.90896 1.24954 0.95273 0.95306 0.97537 1.69895 1.40245 1.17491 1.26215 0.86840 0.79598 0.82807 0.80524 1.20124 1.21193 1.18959 0.76604 0.86486 0.86511 0.86556 0.85833 0.95274 0.95539 0.92626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.76 19.25 29.55 0.57 -3.19 15 2 C -0.12 -2.49 11.79 -38.84 -0.46 -2.94 15 3 C 0.00 0.00 5.72 -107.00 -0.61 -0.62 15 4 C -0.10 -1.71 9.75 -39.20 -0.38 -2.10 15 5 C -0.15 -2.25 10.03 -39.64 -0.40 -2.65 15 6 C -0.11 -1.79 10.04 -39.50 -0.40 -2.19 15 7 C -0.12 -2.37 9.67 -39.64 -0.38 -2.75 15 8 C -0.01 -0.14 5.10 -104.23 -0.53 -0.68 15 9 C 0.01 0.31 3.69 -29.04 -0.11 0.20 15 10 C -0.51 -14.70 9.65 -34.44 -0.33 -15.03 15 11 H 0.07 2.33 7.98 -52.49 -0.42 1.91 15 12 C 0.07 2.07 5.47 -17.82 -0.10 1.98 15 13 N -0.90 -27.90 13.96 55.43 0.77 -27.13 15 14 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 15 15 H -0.28 -6.74 7.11 56.52 0.40 -6.33 15 16 H -0.29 -7.00 7.11 56.52 0.40 -6.60 15 17 H -0.26 -6.30 6.54 56.52 0.37 -5.93 15 18 H 0.22 3.10 7.80 -54.09 -0.42 2.68 15 19 H 0.12 1.72 8.06 -52.49 -0.42 1.30 15 20 H 0.12 1.40 8.06 -52.48 -0.42 0.97 15 21 H 0.12 1.47 8.06 -52.49 -0.42 1.05 15 22 H 0.12 2.19 8.06 -52.48 -0.42 1.76 15 23 H 0.03 0.70 7.11 -51.93 -0.37 0.33 15 24 H 0.03 0.66 6.70 -51.93 -0.35 0.32 15 25 H 0.26 7.63 8.31 -40.82 -0.34 7.29 15 LS Contribution 232.49 15.07 3.50 3.50 Total: -1.00 -31.81 232.49 -5.94 -37.75 By element: Atomic # 1 Polarization: 1.17 SS G_CDS: -2.42 Total: -1.25 kcal Atomic # 6 Polarization: -26.83 SS G_CDS: -3.13 Total: -29.96 kcal Atomic # 7 Polarization: -27.90 SS G_CDS: 0.77 Total: -27.13 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -31.81 -5.94 -37.75 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535845313.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.715 kcal (2) G-P(sol) polarization free energy of solvation -31.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds