Wall clock time and date at job start Mon Mar 30 2020 01:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39556 * 120.14159 * 92.91655 * 3 2 1 5 5 C 1.37946 * 119.85462 * 179.97438 * 4 3 2 6 6 C 1.38371 * 120.14546 * 0.02562 * 5 4 3 7 7 C 1.38322 * 120.28253 * 0.02562 * 6 5 4 8 8 C 1.37992 * 120.14666 * 359.68983 * 7 6 5 9 9 C 1.50703 * 120.07882 * 180.27907 * 8 7 6 10 10 C 1.50696 * 109.47301 * 265.30317 * 9 8 7 11 11 H 1.08000 * 119.99986 * 359.97438 * 10 9 8 12 12 C 1.37875 * 119.99856 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00138 * 180.02562 * 12 10 9 14 14 Si 1.86804 * 120.00082 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.46958 * 89.99768 * 14 12 10 16 16 H 1.48491 * 109.47409 * 209.99869 * 14 12 10 17 17 H 1.48503 * 109.47224 * 330.00180 * 14 12 10 18 18 H 4.52083 * 14.01991 * 0.02562 * 4 2 1 19 19 H 1.07994 * 120.07089 * 359.95316 * 4 3 2 20 20 H 1.08005 * 119.93031 * 180.02562 * 5 4 3 21 21 H 1.08002 * 119.86212 * 179.97438 * 6 5 4 22 22 H 1.08005 * 119.93099 * 179.97438 * 7 6 5 23 23 H 1.08994 * 109.46589 * 25.30514 * 9 8 7 24 24 H 1.08997 * 109.46615 * 145.29847 * 9 8 7 25 25 H 0.96999 * 120.00219 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3067 0.0624 -1.2053 5 6 4.6862 0.0632 -1.1984 6 6 5.3751 0.0024 0.0001 7 6 4.6864 -0.0600 1.1981 8 6 3.3066 -0.0556 1.2053 9 6 2.5579 -0.1173 2.5117 10 6 2.2024 -1.5490 2.8199 11 1 2.4896 -2.3355 2.1378 12 6 1.5107 -1.8547 3.9727 13 7 1.2009 -3.1041 4.2420 14 14 1.0134 -0.4941 5.1523 15 1 -0.3292 0.0187 4.7786 16 1 0.9709 -1.0300 6.5365 17 1 2.0032 0.6106 5.0793 18 1 -1.0500 0.0005 0.0001 19 1 2.7702 0.1090 -2.1414 20 1 5.2297 0.1113 -2.1304 21 1 6.4551 0.0029 0.0002 22 1 5.2299 -0.1077 2.1302 23 1 3.1852 0.2811 3.3091 24 1 1.6462 0.4753 2.4363 25 1 0.7139 -3.3191 5.0529 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535845313.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:36 Heat of formation + Delta-G solvation = 48.998084 kcal Electronic energy + Delta-G solvation = -10299.601819 eV Core-core repulsion = 8436.360444 eV Total energy + Delta-G solvation = -1863.241376 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 186.074 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.22730 -35.50914 -34.54418 -33.22992 -31.03804 -29.40630 -25.03707 -23.97971 -22.03114 -19.53258 -19.00796 -17.12095 -16.38912 -16.25452 -15.88871 -14.84531 -14.47417 -14.28964 -13.79372 -13.62865 -13.01172 -12.56996 -12.11366 -12.02464 -11.90107 -11.87602 -11.66879 -11.11893 -10.81115 -9.61435 -9.22831 -8.32260 -6.36649 0.13254 0.58166 1.32429 1.33703 1.45790 1.93576 2.20614 2.32175 3.01644 3.15778 3.56492 4.10385 4.15253 4.27120 4.55170 4.72972 4.78686 4.99673 5.03571 5.23504 5.33464 5.53238 5.58656 5.62912 5.89884 6.13083 6.25289 6.67037 6.74293 7.25897 8.84596 Molecular weight = 186.07amu Principal moments of inertia in cm(-1) A = 0.042597 B = 0.012862 C = 0.011281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.164219 B = 2176.364873 C = 2481.451495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.170 4.170 3 C -0.029 4.029 4 C -0.103 4.103 5 C -0.132 4.132 6 C -0.104 4.104 7 C -0.139 4.139 8 C -0.051 4.051 9 C 0.022 3.978 10 C -0.511 4.511 11 H 0.024 0.976 12 C 0.011 3.989 13 N -0.948 5.948 14 Si 0.946 3.054 15 H -0.266 1.266 16 H -0.278 1.278 17 H -0.248 1.248 18 H 0.254 0.746 19 H 0.140 0.860 20 H 0.163 0.837 21 H 0.157 0.843 22 H 0.127 0.873 23 H 0.033 0.967 24 H 0.020 0.980 25 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.566 9.129 -8.398 13.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.170 4.170 3 C -0.029 4.029 4 C -0.121 4.121 5 C -0.149 4.149 6 C -0.122 4.122 7 C -0.157 4.157 8 C -0.051 4.051 9 C -0.015 4.015 10 C -0.549 4.549 11 H 0.042 0.958 12 C -0.186 4.186 13 N -0.588 5.588 14 Si 0.769 3.231 15 H -0.191 1.191 16 H -0.203 1.203 17 H -0.171 1.171 18 H 0.270 0.730 19 H 0.158 0.842 20 H 0.180 0.820 21 H 0.175 0.825 22 H 0.145 0.855 23 H 0.051 0.949 24 H 0.038 0.962 25 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.498 9.019 -8.275 13.040 hybrid contribution -0.742 -0.133 0.846 1.134 sum 3.756 8.885 -7.428 12.175 Atomic orbital electron populations 1.25572 0.96597 0.99166 0.99154 1.20567 0.93111 1.01828 1.01471 1.16260 0.87182 1.05170 0.94263 1.21409 0.95311 0.99204 0.96128 1.21379 0.93119 1.01023 0.99408 1.21587 1.01360 0.97751 0.91483 1.21203 0.92692 1.01906 0.99886 1.20334 0.94823 0.95242 0.94664 1.18625 0.95272 0.95774 0.91810 1.20996 1.35913 0.91796 1.06161 0.95796 1.25915 0.95158 0.97990 0.99549 1.70048 1.41515 1.19995 1.27253 0.85718 0.79823 0.79711 0.77866 1.19104 1.20325 1.17118 0.73013 0.84186 0.81988 0.82511 0.85484 0.94877 0.96153 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -7.01 19.25 74.32 1.43 -5.57 15 2 C -0.17 -7.24 11.79 30.02 0.35 -6.89 15 3 C -0.03 -1.20 5.72 -21.40 -0.12 -1.32 15 4 C -0.10 -3.34 9.75 22.52 0.22 -3.12 15 5 C -0.13 -3.53 10.03 22.23 0.22 -3.31 15 6 C -0.10 -2.97 10.04 22.32 0.22 -2.75 15 7 C -0.14 -5.16 9.67 22.23 0.21 -4.95 15 8 C -0.05 -2.26 5.10 -19.61 -0.10 -2.36 15 9 C 0.02 1.13 3.69 29.10 0.11 1.24 15 10 C -0.51 -30.80 9.65 25.60 0.25 -30.55 15 11 H 0.02 1.62 7.98 -2.91 -0.02 1.59 15 12 C 0.01 0.65 5.47 84.65 0.46 1.12 15 13 N -0.95 -60.54 13.96 21.45 0.30 -60.24 15 14 Si 0.95 45.12 27.47 68.60 1.88 47.00 15 15 H -0.27 -12.21 7.11 99.48 0.71 -11.51 15 16 H -0.28 -12.79 7.11 99.48 0.71 -12.08 15 17 H -0.25 -11.02 6.54 99.48 0.65 -10.37 15 18 H 0.25 6.79 7.80 -4.42 -0.03 6.76 15 19 H 0.14 3.78 8.06 -2.91 -0.02 3.76 15 20 H 0.16 2.91 8.06 -2.91 -0.02 2.88 15 21 H 0.16 3.19 8.06 -2.91 -0.02 3.16 15 22 H 0.13 4.45 8.06 -2.91 -0.02 4.43 15 23 H 0.03 1.61 7.11 -2.39 -0.02 1.59 15 24 H 0.02 1.03 6.70 -2.39 -0.02 1.02 15 25 H 0.27 15.86 8.31 -92.71 -0.77 15.09 15 Total: -1.00 -71.93 232.49 6.55 -65.37 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: 1.11 Total: 6.33 kcal Atomic # 6 Polarization: -61.72 SS G_CDS: 3.26 Total: -58.46 kcal Atomic # 7 Polarization: -60.54 SS G_CDS: 0.30 Total: -60.24 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.88 Total: 47.00 kcal Total: -71.93 6.55 -65.37 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535845313.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.369 kcal (2) G-P(sol) polarization free energy of solvation -71.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds