Wall clock time and date at job start Mon Mar 30 2020 02:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47223 * 2 1 4 4 C 1.53000 * 113.56528 * 184.60827 * 3 2 1 5 5 H 1.09001 * 109.47707 * 55.39240 * 4 3 2 6 6 O 1.42900 * 109.47247 * 295.38901 * 4 3 2 7 7 C 1.50707 * 109.47112 * 175.39319 * 4 3 2 8 8 H 1.07999 * 119.99823 * 359.97438 * 7 4 3 9 9 C 1.37877 * 119.99949 * 180.02562 * 7 4 3 10 10 N 1.31512 * 120.00260 * 359.97438 * 9 7 4 11 11 Si 1.86802 * 119.99980 * 180.02562 * 9 7 4 12 12 H 1.48505 * 109.47045 * 89.99634 * 11 9 7 13 13 H 1.48503 * 109.47035 * 209.99855 * 11 9 7 14 14 H 1.48506 * 109.46892 * 329.99756 * 11 9 7 15 15 C 1.53367 * 114.56768 * 50.33488 * 3 2 1 16 16 O 1.43348 * 88.49370 * 220.44144 * 15 3 2 17 17 C 1.43342 * 88.32461 * 28.12684 * 16 15 3 18 18 H 1.08998 * 109.47399 * 180.02562 * 1 2 3 19 19 H 1.08996 * 109.47178 * 299.99850 * 1 2 3 20 20 H 1.09007 * 109.47071 * 60.00112 * 1 2 3 21 21 H 1.09002 * 109.47251 * 239.99701 * 2 1 3 22 22 H 1.08996 * 109.47332 * 120.00248 * 2 1 3 23 23 H 0.96698 * 114.00030 * 300.00406 * 6 4 3 24 24 H 0.96998 * 120.00484 * 180.02562 * 10 9 7 25 25 H 1.09002 * 113.39529 * 105.52055 * 15 3 2 26 26 H 1.09005 * 113.38849 * 335.36348 * 15 3 2 27 27 H 1.09005 * 113.39677 * 86.74628 * 17 16 15 28 28 H 1.08999 * 113.39618 * 216.90341 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5618 1.5532 -0.1127 5 1 3.9002 1.0202 -1.0013 6 8 4.1683 0.9791 1.0469 7 6 3.9534 3.0046 -0.2179 8 1 3.1929 3.7713 -0.2061 9 6 5.2826 3.3536 -0.3304 10 7 6.2086 2.4199 -0.3453 11 14 5.7681 5.1528 -0.4601 12 1 5.9952 5.7035 0.9002 13 1 7.0152 5.2726 -1.2574 14 1 4.6797 5.9123 -1.1263 15 6 1.4131 2.3404 1.0737 16 8 1.3574 3.3955 0.1050 17 6 1.2614 2.3951 -0.9171 18 1 -0.3634 -1.0276 0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8901 21 1 1.8933 -0.5139 -0.8900 22 1 1.8933 -0.5138 0.8899 23 1 3.9119 1.4047 1.8764 24 1 7.1437 2.6654 -0.4241 25 1 2.0839 2.5523 1.9063 26 1 0.4303 2.0015 1.4015 27 1 0.2390 2.0699 -1.1098 28 1 1.7986 2.6552 -1.8292 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535853190.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:38 Heat of formation + Delta-G solvation = -59.971592 kcal Electronic energy + Delta-G solvation = -12251.074652 eV Core-core repulsion = 10075.799077 eV Total energy + Delta-G solvation = -2175.275575 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.53542 -35.21233 -33.22130 -31.98375 -28.50218 -25.93152 -25.38869 -23.77437 -21.72701 -17.87724 -17.03436 -15.45055 -15.43013 -15.08827 -14.44873 -13.96394 -13.42770 -13.21219 -12.87741 -11.85099 -11.72365 -11.51397 -10.87878 -10.78766 -10.76738 -10.56383 -10.16586 -9.70464 -9.67464 -9.46781 -8.51540 -8.17631 -8.05362 -5.89780 -4.03417 3.35883 3.42485 3.48447 4.50182 4.79279 4.91565 5.36213 5.46867 5.48758 5.52695 5.76199 5.94969 6.08376 6.23131 6.30995 6.34947 6.43339 6.59438 6.62829 6.87217 6.91044 7.03443 7.73041 8.06329 8.32019 9.05779 9.43197 9.71669 11.15531 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.055311 B = 0.014841 C = 0.012809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.111038 B = 1886.210836 C = 2185.406884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.108 4.108 3 C -0.148 4.148 4 C 0.255 3.745 5 H 0.059 0.941 6 O -0.561 6.561 7 C -0.573 4.573 8 H 0.090 0.910 9 C 0.074 3.926 10 N -0.869 5.869 11 Si 0.888 3.112 12 H -0.282 1.282 13 H -0.289 1.289 14 H -0.273 1.273 15 C 0.038 3.962 16 O -0.353 6.353 17 C 0.038 3.962 18 H 0.048 0.952 19 H 0.053 0.947 20 H 0.055 0.945 21 H 0.061 0.939 22 H 0.066 0.934 23 H 0.343 0.657 24 H 0.257 0.743 25 H 0.079 0.921 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.198 -2.485 0.965 9.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.146 4.146 3 C -0.148 4.148 4 C 0.197 3.803 5 H 0.076 0.924 6 O -0.364 6.364 7 C -0.611 4.611 8 H 0.107 0.893 9 C -0.130 4.130 10 N -0.506 5.506 11 Si 0.716 3.284 12 H -0.208 1.208 13 H -0.215 1.215 14 H -0.198 1.198 15 C -0.039 4.039 16 O -0.271 6.271 17 C -0.039 4.039 18 H 0.067 0.933 19 H 0.072 0.928 20 H 0.074 0.926 21 H 0.080 0.920 22 H 0.085 0.915 23 H 0.187 0.813 24 H 0.067 0.933 25 H 0.097 0.903 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.728 -2.621 0.490 9.126 hybrid contribution 0.104 1.232 0.279 1.267 sum -8.624 -1.389 0.769 8.769 Atomic orbital electron populations 1.22007 0.97081 1.00841 1.01551 1.21309 0.94157 0.96805 1.02308 1.24149 1.01431 0.93203 0.96054 1.19086 0.81283 0.93940 0.85976 0.92382 1.86570 1.72833 1.60878 1.16093 1.22348 0.93080 0.93421 1.52223 0.89277 1.25104 0.96890 0.96838 0.94211 1.70103 1.00270 1.32065 1.48174 0.86686 0.77757 0.85988 0.78002 1.20780 1.21496 1.19795 1.23590 0.98553 0.87283 0.94496 1.89801 1.94245 1.24400 1.18618 1.23662 0.97980 0.87751 0.94467 0.93307 0.92810 0.92620 0.92026 0.91507 0.81314 0.93344 0.90294 0.91969 0.91775 0.89742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 9.00 37.15 0.33 -1.77 15 2 C -0.11 -1.79 5.69 -26.74 -0.15 -1.95 15 3 C -0.15 -2.91 1.28 -154.09 -0.20 -3.11 15 4 C 0.25 6.36 2.66 -27.88 -0.07 6.29 15 5 H 0.06 1.61 8.14 -51.93 -0.42 1.19 15 6 O -0.56 -14.30 12.61 -35.23 -0.44 -14.74 15 7 C -0.57 -15.74 7.59 -34.44 -0.26 -16.00 15 8 H 0.09 2.47 4.91 -52.49 -0.26 2.21 15 9 C 0.07 2.11 5.40 -17.82 -0.10 2.02 15 10 N -0.87 -26.10 12.84 55.43 0.71 -25.39 15 11 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 15 12 H -0.28 -6.94 7.11 56.52 0.40 -6.53 15 13 H -0.29 -7.10 7.11 56.52 0.40 -6.70 15 14 H -0.27 -6.74 7.11 56.52 0.40 -6.34 15 15 C 0.04 0.71 7.29 24.59 0.18 0.89 15 16 O -0.35 -7.60 10.11 -35.23 -0.36 -7.96 15 17 C 0.04 0.73 7.15 24.64 0.18 0.91 15 18 H 0.05 0.57 8.14 -51.93 -0.42 0.15 15 19 H 0.05 0.69 6.19 -51.93 -0.32 0.37 15 20 H 0.05 0.72 6.10 -51.92 -0.32 0.40 15 21 H 0.06 1.03 8.14 -51.93 -0.42 0.61 15 22 H 0.07 1.12 8.14 -51.93 -0.42 0.70 15 23 H 0.34 7.81 8.11 45.56 0.37 8.18 15 24 H 0.26 7.36 8.31 -40.82 -0.34 7.02 15 25 H 0.08 1.51 7.31 -51.93 -0.38 1.14 15 26 H 0.06 0.99 5.96 -51.93 -0.31 0.68 15 27 H 0.06 1.03 5.62 -51.93 -0.29 0.73 15 28 H 0.08 1.71 7.92 -51.93 -0.41 1.30 15 LS Contribution 225.48 15.07 3.40 3.40 Total: -1.00 -30.79 225.48 -4.55 -35.34 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -2.74 Total: 5.09 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: -0.09 Total: -12.73 kcal Atomic # 7 Polarization: -26.10 SS G_CDS: 0.71 Total: -25.39 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.80 Total: -22.70 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -30.79 -4.55 -35.34 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535853190.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.630 kcal (2) G-P(sol) polarization free energy of solvation -30.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds