Wall clock time and date at job start Mon Mar 30 2020 02:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47223 * 2 1 4 4 C 1.53000 * 113.56528 * 184.60827 * 3 2 1 5 5 H 1.09001 * 109.47707 * 55.39240 * 4 3 2 6 6 O 1.42900 * 109.47247 * 295.38901 * 4 3 2 7 7 C 1.50707 * 109.47112 * 175.39319 * 4 3 2 8 8 H 1.07999 * 119.99823 * 359.97438 * 7 4 3 9 9 C 1.37877 * 119.99949 * 180.02562 * 7 4 3 10 10 N 1.31512 * 120.00260 * 359.97438 * 9 7 4 11 11 Si 1.86802 * 119.99980 * 180.02562 * 9 7 4 12 12 H 1.48505 * 109.47045 * 89.99634 * 11 9 7 13 13 H 1.48503 * 109.47035 * 209.99855 * 11 9 7 14 14 H 1.48506 * 109.46892 * 329.99756 * 11 9 7 15 15 C 1.53367 * 114.56768 * 50.33488 * 3 2 1 16 16 O 1.43348 * 88.49370 * 220.44144 * 15 3 2 17 17 C 1.43342 * 88.32461 * 28.12684 * 16 15 3 18 18 H 1.08998 * 109.47399 * 180.02562 * 1 2 3 19 19 H 1.08996 * 109.47178 * 299.99850 * 1 2 3 20 20 H 1.09007 * 109.47071 * 60.00112 * 1 2 3 21 21 H 1.09002 * 109.47251 * 239.99701 * 2 1 3 22 22 H 1.08996 * 109.47332 * 120.00248 * 2 1 3 23 23 H 0.96698 * 114.00030 * 300.00406 * 6 4 3 24 24 H 0.96998 * 120.00484 * 180.02562 * 10 9 7 25 25 H 1.09002 * 113.39529 * 105.52055 * 15 3 2 26 26 H 1.09005 * 113.38849 * 335.36348 * 15 3 2 27 27 H 1.09005 * 113.39677 * 86.74628 * 17 16 15 28 28 H 1.08999 * 113.39618 * 216.90341 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5618 1.5532 -0.1127 5 1 3.9002 1.0202 -1.0013 6 8 4.1683 0.9791 1.0469 7 6 3.9534 3.0046 -0.2179 8 1 3.1929 3.7713 -0.2061 9 6 5.2826 3.3536 -0.3304 10 7 6.2086 2.4199 -0.3453 11 14 5.7681 5.1528 -0.4601 12 1 5.9952 5.7035 0.9002 13 1 7.0152 5.2726 -1.2574 14 1 4.6797 5.9123 -1.1263 15 6 1.4131 2.3404 1.0737 16 8 1.3574 3.3955 0.1050 17 6 1.2614 2.3951 -0.9171 18 1 -0.3634 -1.0276 0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8901 21 1 1.8933 -0.5139 -0.8900 22 1 1.8933 -0.5138 0.8899 23 1 3.9119 1.4047 1.8764 24 1 7.1437 2.6654 -0.4241 25 1 2.0839 2.5523 1.9063 26 1 0.4303 2.0015 1.4015 27 1 0.2390 2.0699 -1.1098 28 1 1.7986 2.6552 -1.8292 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535853190.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:38 Heat of formation + Delta-G solvation = -83.313523 kcal Electronic energy + Delta-G solvation = -12252.086834 eV Core-core repulsion = 10075.799077 eV Total energy + Delta-G solvation = -2176.287757 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -42.11333 -37.16701 -34.67221 -34.10932 -30.19785 -27.73506 -26.94693 -25.34691 -23.44169 -19.60006 -18.91207 -17.17223 -16.95141 -16.64633 -16.50825 -15.82492 -15.16619 -14.65967 -14.57713 -13.40374 -13.25114 -12.96757 -12.83966 -12.75730 -12.47268 -12.06763 -11.90663 -11.47573 -11.32680 -10.95250 -10.66157 -10.05873 -9.90389 -8.07417 -6.26441 1.38703 1.39749 1.51333 2.43091 3.16617 3.25555 3.43249 4.02127 4.19586 4.25330 4.36011 4.52498 4.64274 4.72734 4.87636 4.97491 5.12983 5.21321 5.29591 5.38511 5.48922 5.56652 5.71055 5.86337 6.22769 6.91963 7.41263 7.57929 8.97925 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.055311 B = 0.014841 C = 0.012809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.111038 B = 1886.210836 C = 2185.406884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.103 4.103 3 C -0.150 4.150 4 C 0.252 3.748 5 H 0.020 0.980 6 O -0.576 6.576 7 C -0.575 4.575 8 H 0.089 0.911 9 C 0.019 3.981 10 N -0.908 5.908 11 Si 0.951 3.049 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.270 1.270 15 C 0.044 3.956 16 O -0.383 6.383 17 C 0.042 3.958 18 H 0.069 0.931 19 H 0.064 0.936 20 H 0.063 0.937 21 H 0.052 0.948 22 H 0.062 0.938 23 H 0.354 0.646 24 H 0.256 0.744 25 H 0.068 0.932 26 H 0.104 0.896 27 H 0.107 0.893 28 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.089 -2.216 1.361 11.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.140 4.140 3 C -0.150 4.150 4 C 0.195 3.805 5 H 0.037 0.963 6 O -0.380 6.380 7 C -0.613 4.613 8 H 0.106 0.894 9 C -0.182 4.182 10 N -0.547 5.547 11 Si 0.777 3.223 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.195 1.195 15 C -0.032 4.032 16 O -0.302 6.302 17 C -0.034 4.034 18 H 0.088 0.912 19 H 0.083 0.917 20 H 0.081 0.919 21 H 0.071 0.929 22 H 0.080 0.920 23 H 0.199 0.801 24 H 0.065 0.935 25 H 0.087 0.913 26 H 0.121 0.879 27 H 0.124 0.876 28 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.634 -2.348 0.890 10.927 hybrid contribution 0.681 1.104 0.156 1.307 sum -9.953 -1.244 1.047 10.085 Atomic orbital electron populations 1.21950 0.93795 1.02602 1.02364 1.21256 0.96877 0.94165 1.01746 1.23822 0.97780 0.95866 0.97575 1.18895 0.85081 0.91972 0.84588 0.96269 1.86503 1.73684 1.61054 1.16742 1.22693 0.93013 0.94783 1.50794 0.89378 1.25905 0.97188 1.00790 0.94284 1.70234 1.00460 1.34055 1.49996 0.85686 0.77357 0.81159 0.78079 1.20204 1.21179 1.19488 1.23739 1.00279 0.85821 0.93354 1.89764 1.94568 1.25922 1.19954 1.23815 0.99841 0.86689 0.93087 0.91241 0.91731 0.91861 0.92891 0.91957 0.80103 0.93496 0.91318 0.87875 0.87570 0.91817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 9.00 71.98 0.65 -2.73 15 2 C -0.10 -3.20 5.69 30.59 0.17 -3.03 15 3 C -0.15 -5.72 1.28 -51.91 -0.07 -5.79 15 4 C 0.25 12.80 2.66 29.85 0.08 12.88 15 5 H 0.02 1.12 8.14 -2.39 -0.02 1.10 15 6 O -0.58 -29.77 12.61 -148.98 -1.88 -31.65 15 7 C -0.58 -31.90 7.59 25.60 0.19 -31.70 15 8 H 0.09 4.88 4.91 -2.91 -0.01 4.87 15 9 C 0.02 1.09 5.40 84.65 0.46 1.55 15 10 N -0.91 -55.72 12.84 21.45 0.28 -55.44 15 11 Si 0.95 45.61 29.54 68.60 2.03 47.64 15 12 H -0.28 -12.92 7.11 99.48 0.71 -12.21 15 13 H -0.29 -13.47 7.11 99.48 0.71 -12.76 15 14 H -0.27 -12.70 7.11 99.48 0.71 -12.00 15 15 C 0.04 1.56 7.29 63.84 0.47 2.02 15 16 O -0.38 -15.83 10.11 -148.98 -1.51 -17.34 15 17 C 0.04 1.53 7.15 63.87 0.46 1.98 15 18 H 0.07 1.31 8.14 -2.39 -0.02 1.30 15 19 H 0.06 1.33 6.19 -2.39 -0.01 1.31 15 20 H 0.06 1.33 6.10 -2.38 -0.01 1.32 15 21 H 0.05 1.72 8.14 -2.39 -0.02 1.70 15 22 H 0.06 1.98 8.14 -2.39 -0.02 1.96 15 23 H 0.35 16.22 8.11 -74.06 -0.60 15.62 15 24 H 0.26 14.98 8.31 -92.71 -0.77 14.21 15 25 H 0.07 2.53 7.31 -2.39 -0.02 2.51 15 26 H 0.10 2.81 5.96 -2.38 -0.01 2.79 15 27 H 0.11 2.98 5.62 -2.38 -0.01 2.97 15 28 H 0.06 2.55 7.92 -2.39 -0.02 2.53 15 Total: -1.00 -66.26 225.48 1.89 -64.37 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: 0.56 Total: 17.22 kcal Atomic # 6 Polarization: -27.22 SS G_CDS: 2.41 Total: -24.81 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: 0.28 Total: -55.44 kcal Atomic # 8 Polarization: -45.60 SS G_CDS: -3.39 Total: -48.98 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -66.26 1.89 -64.37 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535853190.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.939 kcal (2) G-P(sol) polarization free energy of solvation -66.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds