Wall clock time and date at job start Mon Mar 30 2020 02:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46981 * 2 1 4 4 C 1.52997 * 113.53570 * 175.42406 * 3 2 1 5 5 H 1.08999 * 109.46732 * 304.56740 * 4 3 2 6 6 O 1.42891 * 109.47589 * 64.57345 * 4 3 2 7 7 C 1.50703 * 109.47039 * 184.57737 * 4 3 2 8 8 H 1.08006 * 119.99765 * 359.97438 * 7 4 3 9 9 C 1.37872 * 120.00048 * 179.97438 * 7 4 3 10 10 N 1.31514 * 120.00348 * 359.97438 * 9 7 4 11 11 Si 1.86799 * 120.00236 * 179.97438 * 9 7 4 12 12 H 1.48499 * 109.47148 * 59.99986 * 11 9 7 13 13 H 1.48500 * 109.47615 * 180.02562 * 11 9 7 14 14 H 1.48508 * 109.47162 * 300.00464 * 11 9 7 15 15 C 1.53367 * 114.56575 * 309.66325 * 3 2 1 16 16 O 1.43355 * 88.44795 * 86.60805 * 15 3 2 17 17 C 1.43354 * 88.31830 * 28.15101 * 16 15 3 18 18 H 1.09001 * 109.46824 * 300.00329 * 1 2 3 19 19 H 1.08997 * 109.46928 * 60.00033 * 1 2 3 20 20 H 1.09001 * 109.46620 * 180.02562 * 1 2 3 21 21 H 1.08994 * 109.47447 * 239.99847 * 2 1 3 22 22 H 1.09004 * 109.46875 * 119.99092 * 2 1 3 23 23 H 0.96703 * 113.99978 * 60.00155 * 6 4 3 24 24 H 0.97002 * 120.00805 * 179.97438 * 10 9 7 25 25 H 1.09006 * 113.39116 * 331.71487 * 15 3 2 26 26 H 1.09001 * 113.43377 * 201.51549 * 15 3 2 27 27 H 1.08998 * 113.38952 * 86.74569 * 17 16 15 28 28 H 1.09001 * 113.39148 * 216.94625 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5619 1.5525 0.1119 5 1 3.9003 1.0198 1.0006 6 8 4.1677 0.9777 -1.0476 7 6 3.9544 3.0038 0.2166 8 1 3.1942 3.7710 0.2040 9 6 5.2837 3.3521 0.3283 10 7 6.2092 2.4180 0.3440 11 14 5.7702 5.1510 0.4573 12 1 5.1402 5.7491 1.6617 13 1 7.2473 5.2579 0.5660 14 1 5.3097 5.8765 -0.7540 15 6 1.4132 2.3404 -1.0738 16 8 0.3439 2.6195 -0.1607 17 6 1.2618 2.3940 0.9171 18 1 -0.3633 0.5139 0.8900 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3632 -1.0277 0.0005 21 1 1.8934 -0.5138 -0.8899 22 1 1.8934 -0.5137 0.8901 23 1 3.9111 1.4032 -1.8772 24 1 7.1445 2.6630 0.4223 25 1 1.0929 1.7946 -1.9613 26 1 2.0170 3.2156 -1.3136 27 1 1.8265 3.2830 1.1977 28 1 0.8089 1.8952 1.7740 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535853199.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:39 Heat of formation + Delta-G solvation = -67.667281 kcal Electronic energy + Delta-G solvation = -12203.172638 eV Core-core repulsion = 10027.563353 eV Total energy + Delta-G solvation = -2175.609285 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.56617 -35.42049 -32.64812 -32.12777 -29.13185 -25.78236 -25.38070 -23.61814 -21.74806 -18.04120 -16.94772 -15.53763 -15.48706 -15.17121 -14.58917 -13.86626 -13.57730 -12.79885 -12.48187 -11.97143 -11.59015 -11.38790 -11.22322 -10.97620 -10.82435 -10.75644 -10.40557 -10.03735 -9.42850 -9.27507 -8.66663 -8.40995 -8.07856 -6.05103 -4.23632 3.26155 3.32061 3.33754 4.34635 4.75441 4.94272 5.23982 5.46184 5.74906 5.81769 5.93371 6.13229 6.16604 6.23219 6.31971 6.38744 6.59838 6.62509 6.78227 6.83685 6.92992 6.95627 7.66068 7.79180 8.12808 8.77995 9.33455 9.53776 10.98985 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.056137 B = 0.014077 C = 0.012266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.658155 B = 1988.542329 C = 2282.096319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 C -0.155 4.155 4 C 0.244 3.756 5 H 0.057 0.943 6 O -0.562 6.562 7 C -0.576 4.576 8 H 0.062 0.938 9 C 0.081 3.919 10 N -0.858 5.858 11 Si 0.887 3.113 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.276 1.276 15 C 0.041 3.959 16 O -0.386 6.386 17 C 0.042 3.958 18 H 0.052 0.948 19 H 0.055 0.945 20 H 0.039 0.961 21 H 0.065 0.935 22 H 0.060 0.940 23 H 0.344 0.656 24 H 0.261 0.739 25 H 0.066 0.934 26 H 0.090 0.910 27 H 0.096 0.904 28 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.079 -1.202 -0.900 7.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.128 4.128 3 C -0.156 4.156 4 C 0.187 3.813 5 H 0.075 0.925 6 O -0.364 6.364 7 C -0.613 4.613 8 H 0.080 0.920 9 C -0.126 4.126 10 N -0.493 5.493 11 Si 0.714 3.286 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.201 1.201 15 C -0.035 4.035 16 O -0.305 6.305 17 C -0.034 4.034 18 H 0.071 0.929 19 H 0.074 0.926 20 H 0.058 0.942 21 H 0.084 0.916 22 H 0.078 0.922 23 H 0.187 0.813 24 H 0.071 0.929 25 H 0.084 0.916 26 H 0.108 0.892 27 H 0.114 0.886 28 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.892 -1.580 -0.443 7.085 hybrid contribution 0.242 1.391 -0.231 1.431 sum -6.650 -0.189 -0.674 6.687 Atomic orbital electron populations 1.21821 0.96349 0.99657 1.02381 1.21103 0.94740 0.94964 1.01986 1.23921 1.01053 0.94206 0.96384 1.19202 0.82769 0.93252 0.86120 0.92501 1.86558 1.73044 1.60751 1.16009 1.21702 0.92401 0.92676 1.54533 0.92048 1.25043 0.96743 0.97019 0.93781 1.70064 1.00535 1.32257 1.46453 0.86768 0.77492 0.85543 0.78787 1.20119 1.21202 1.20119 1.23716 0.87460 0.98720 0.93627 1.89681 1.28452 1.93122 1.19215 1.23831 0.89263 0.99200 0.91143 0.92878 0.92570 0.94203 0.91606 0.92152 0.81296 0.92882 0.91573 0.89221 0.88601 0.91533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 8.57 37.16 0.32 -1.94 15 2 C -0.09 -1.60 5.67 -26.73 -0.15 -1.75 15 3 C -0.15 -3.08 1.27 -154.13 -0.20 -3.28 15 4 C 0.24 5.92 2.68 -27.88 -0.07 5.85 15 5 H 0.06 1.54 8.14 -51.93 -0.42 1.12 15 6 O -0.56 -13.97 12.61 -35.23 -0.44 -14.42 15 7 C -0.58 -14.88 7.11 -34.44 -0.24 -15.13 15 8 H 0.06 1.54 5.11 -52.48 -0.27 1.27 15 9 C 0.08 2.18 5.40 -17.82 -0.10 2.09 15 10 N -0.86 -24.75 12.84 55.43 0.71 -24.04 15 11 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 15 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 13 H -0.29 -6.67 7.11 56.52 0.40 -6.27 15 14 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 15 C 0.04 0.78 6.78 24.60 0.17 0.95 15 16 O -0.39 -7.53 10.80 -35.23 -0.38 -7.91 15 17 C 0.04 0.81 7.03 24.60 0.17 0.99 15 18 H 0.05 0.84 6.48 -51.93 -0.34 0.50 15 19 H 0.06 0.90 6.64 -51.93 -0.35 0.55 15 20 H 0.04 0.54 8.14 -51.93 -0.42 0.12 15 21 H 0.07 1.16 8.14 -51.93 -0.42 0.74 15 22 H 0.06 1.06 8.14 -51.93 -0.42 0.64 15 23 H 0.34 7.59 8.73 45.56 0.40 7.99 15 24 H 0.26 7.19 8.31 -40.82 -0.34 6.85 15 25 H 0.07 1.13 7.79 -51.93 -0.40 0.73 15 26 H 0.09 1.80 6.52 -51.93 -0.34 1.46 15 27 H 0.10 1.98 5.86 -51.93 -0.30 1.68 15 28 H 0.07 1.17 7.24 -51.93 -0.38 0.80 15 LS Contribution 226.85 15.07 3.42 3.42 Total: -1.00 -28.65 226.85 -4.62 -33.27 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -2.80 Total: 6.29 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: -0.11 Total: -12.23 kcal Atomic # 7 Polarization: -24.75 SS G_CDS: 0.71 Total: -24.04 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.82 Total: -22.33 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -28.65 -4.62 -33.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535853199.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.394 kcal (2) G-P(sol) polarization free energy of solvation -28.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds