Wall clock time and date at job start Mon Mar 30 2020 01:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35103 * 126.47971 * 2 1 4 4 N 1.30998 * 109.69669 * 179.97438 * 3 2 1 5 5 C 1.33119 * 109.98643 * 359.75046 * 4 3 2 6 6 Cl 1.73598 * 126.28672 * 180.25498 * 5 4 3 7 7 C 1.38499 * 126.47923 * 179.97438 * 2 1 3 8 8 C 1.39985 * 127.07646 * 359.97438 * 7 2 1 9 9 H 1.07996 * 120.00112 * 326.31967 * 8 7 2 10 10 C 1.40060 * 119.99978 * 146.31658 * 8 7 2 11 11 N 1.30878 * 119.99751 * 335.14906 * 10 8 7 12 12 Si 1.86794 * 119.99684 * 155.14852 * 10 8 7 13 13 H 1.48498 * 109.47351 * 269.99768 * 12 10 8 14 14 H 1.48498 * 109.47538 * 30.00105 * 12 10 8 15 15 H 1.48501 * 109.46819 * 150.00316 * 12 10 8 16 16 H 1.09000 * 109.47354 * 270.03433 * 1 2 3 17 17 H 1.09001 * 109.46801 * 30.03303 * 1 2 3 18 18 H 1.08998 * 109.46970 * 150.02646 * 1 2 3 19 19 H 1.08000 * 125.15585 * 359.94828 * 3 2 1 20 20 H 0.97000 * 120.00373 * 354.57027 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2682 1.0863 0.0000 4 7 3.5224 0.7081 0.0006 5 6 3.5968 -0.6210 0.0064 6 17 5.0513 -1.5686 0.0155 7 6 2.2884 -1.1136 0.0005 8 6 1.8921 -2.4562 0.0016 9 1 0.9930 -2.7534 0.5208 10 6 2.6617 -3.4141 -0.6707 11 7 3.4301 -3.0541 -1.6671 12 14 2.5911 -5.2052 -0.1452 13 1 3.6276 -5.4593 0.8875 14 1 1.2493 -5.5039 0.4164 15 1 2.8406 -6.0764 -1.3216 16 1 -0.3634 0.0006 1.0277 17 1 -0.3633 0.8897 -0.5144 18 1 -0.3633 -0.8902 -0.5134 19 1 1.9279 2.1113 -0.0008 20 1 3.4079 -2.1401 -1.9911 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001536187027.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:39 Heat of formation + Delta-G solvation = 15.808736 kcal Electronic energy + Delta-G solvation = -9474.332661 eV Core-core repulsion = 7503.678894 eV Total energy + Delta-G solvation = -1970.653767 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 186.025 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -42.04028 -36.92044 -35.65877 -34.36312 -30.38652 -27.46666 -26.49635 -22.02320 -21.61381 -19.42543 -17.41226 -16.30106 -15.81311 -15.44763 -15.15147 -14.37772 -13.93777 -13.55489 -13.26275 -12.84924 -12.15255 -11.93902 -11.78943 -11.73099 -10.75616 -10.52560 -10.12785 -9.15462 -8.84532 -6.42735 1.32845 1.56239 1.67447 1.79668 1.83611 2.37037 2.42944 2.62876 3.12540 4.21050 4.29652 4.53642 4.72415 4.80240 5.33100 5.58846 5.93726 6.00147 6.34768 6.84143 7.03092 7.52099 8.19948 Molecular weight = 186.03amu Principal moments of inertia in cm(-1) A = 0.041722 B = 0.020850 C = 0.014926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.952204 B = 1342.587883 C = 1875.500936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.503 5.503 3 C 0.107 3.893 4 N -0.511 5.511 5 C -0.124 4.124 6 Cl -0.051 7.051 7 C 0.181 3.819 8 C -0.552 4.552 9 H 0.079 0.921 10 C 0.016 3.984 11 N -0.801 5.801 12 Si 1.115 2.885 13 H -0.273 1.273 14 H -0.255 1.255 15 H -0.273 1.273 16 H 0.073 0.927 17 H 0.107 0.893 18 H 0.071 0.929 19 H 0.228 0.772 20 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.246 0.617 2.180 6.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.196 5.196 3 C -0.170 4.170 4 N -0.232 5.232 5 C -0.276 4.276 6 Cl -0.024 7.024 7 C 0.067 3.933 8 C -0.586 4.586 9 H 0.097 0.903 10 C -0.203 4.203 11 N -0.423 5.423 12 Si 0.934 3.066 13 H -0.198 1.198 14 H -0.179 1.179 15 H -0.198 1.198 16 H 0.091 0.909 17 H 0.126 0.874 18 H 0.090 0.910 19 H 0.244 0.756 20 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.898 -0.316 1.831 5.238 hybrid contribution -0.870 1.280 0.219 1.563 sum -5.768 0.963 2.050 6.197 Atomic orbital electron populations 1.21882 0.75334 1.04589 1.03204 1.45605 1.07908 1.05998 1.60046 1.24648 0.84264 0.94126 1.13934 1.68951 1.21622 1.12573 1.20019 1.20913 0.86254 0.89009 1.31376 1.98179 1.36300 1.69952 1.97926 1.18762 0.87827 0.88489 0.98270 1.19419 1.13742 0.89867 1.35559 0.90333 1.28026 0.90520 1.10067 0.91663 1.70466 1.31251 1.22123 1.18482 0.83007 0.78403 0.68413 0.76826 1.19794 1.17925 1.19774 0.90875 0.87443 0.91041 0.75603 0.91416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.83 11.02 127.77 1.41 4.24 14 2 N -0.50 -22.14 3.20 -542.95 -1.74 -23.87 14 3 C 0.11 4.65 12.52 180.10 2.25 6.90 14 4 N -0.51 -26.74 11.18 -187.79 -2.10 -28.84 14 5 C -0.12 -6.92 6.93 84.88 0.59 -6.33 14 6 Cl -0.05 -2.74 26.11 -2.72 -0.07 -2.81 14 7 C 0.18 9.63 5.98 38.89 0.23 9.86 14 8 C -0.55 -28.89 8.77 23.14 0.20 -28.69 14 9 H 0.08 3.91 7.96 -2.91 -0.02 3.88 14 10 C 0.02 0.82 4.52 85.28 0.39 1.20 14 11 N -0.80 -44.15 11.58 21.86 0.25 -43.90 14 12 Si 1.12 44.02 30.00 68.60 2.06 46.08 14 13 H -0.27 -10.63 7.11 99.48 0.71 -9.92 14 14 H -0.26 -8.98 7.11 99.48 0.71 -8.27 14 15 H -0.27 -10.46 7.11 99.48 0.71 -9.76 14 16 H 0.07 1.99 8.14 -2.39 -0.02 1.97 14 17 H 0.11 2.47 8.14 -2.39 -0.02 2.45 14 18 H 0.07 2.31 7.91 -2.39 -0.02 2.29 14 19 H 0.23 7.18 8.06 -2.91 -0.02 7.16 14 20 H 0.27 16.23 6.88 -92.71 -0.64 15.59 14 Total: -1.00 -65.62 200.21 4.85 -60.77 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: 1.38 Total: 5.39 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: 5.07 Total: -12.81 kcal Atomic # 7 Polarization: -93.03 SS G_CDS: -3.58 Total: -96.61 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.06 Total: 46.08 kcal Atomic # 17 Polarization: -2.74 SS G_CDS: -0.07 Total: -2.81 kcal Total: -65.62 4.85 -60.77 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536187027.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.576 kcal (2) G-P(sol) polarization free energy of solvation -65.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds