Wall clock time and date at job start Mon Mar 30 2020 02:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39682 * 120.21350 * 35.13390 * 3 2 1 5 5 C 1.37839 * 119.92717 * 180.02562 * 4 3 2 6 6 C 1.38605 * 120.37675 * 0.02562 * 5 4 3 7 7 C 1.37975 * 120.43577 * 359.97438 * 6 5 4 8 8 C 1.39033 * 120.05414 * 0.02562 * 7 6 5 9 9 N 1.38711 * 120.18236 * 179.97438 * 8 7 6 10 10 C 1.36793 * 119.99780 * 359.97438 * 9 8 7 11 11 H 1.08001 * 120.00186 * 359.97438 * 10 9 8 12 12 C 1.38851 * 119.99715 * 180.02562 * 10 9 8 13 13 N 1.31540 * 120.00081 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 119.99877 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47397 * 359.97438 * 14 12 10 16 16 H 1.48505 * 109.47295 * 120.00149 * 14 12 10 17 17 H 1.48506 * 109.47207 * 239.99927 * 14 12 10 18 18 H 1.07998 * 120.04119 * 359.97438 * 4 3 2 19 19 H 1.08002 * 119.81039 * 180.02562 * 5 4 3 20 20 H 1.08002 * 119.78510 * 180.02562 * 6 5 4 21 21 H 1.07997 * 119.96791 * 179.72174 * 7 6 5 22 22 H 0.96994 * 120.00140 * 179.97438 * 9 8 7 23 23 H 0.96997 * 120.00482 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2714 -0.9862 -0.6947 5 6 4.6498 -0.9803 -0.6903 6 6 5.3443 0.0002 0.0008 7 6 4.6650 0.9822 0.6921 8 6 3.2747 0.9934 0.6997 9 7 2.5891 1.9791 1.3943 10 6 3.2809 2.9434 2.0746 11 1 4.3608 2.9370 2.0713 12 6 2.5945 3.9298 2.7702 13 7 1.2792 3.9373 2.7746 14 14 3.5391 5.2462 3.6998 15 1 4.9973 5.0159 3.5390 16 1 3.1861 6.5836 3.1594 17 1 3.1849 5.1853 5.1407 18 1 2.7359 -1.7535 -1.2339 19 1 5.1917 -1.7439 -1.2283 20 1 6.4243 -0.0040 -0.0025 21 1 5.2137 1.7399 1.2317 22 1 1.6192 1.9847 1.3975 23 1 0.7996 4.6261 3.2609 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020051294.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:09 Heat of formation + Delta-G solvation = 46.703621 kcal Electronic energy + Delta-G solvation = -10449.332335 eV Core-core repulsion = 8455.139642 eV Total energy + Delta-G solvation = -1994.192693 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 188.064 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.71374 -35.45919 -35.25912 -32.16831 -30.33171 -28.26160 -24.94246 -22.90828 -20.97250 -18.45287 -17.50346 -16.32520 -14.98377 -14.62129 -13.81054 -13.31950 -13.29507 -13.17522 -12.25094 -11.99912 -11.90121 -11.83778 -11.31136 -10.86695 -10.72761 -10.45447 -10.42934 -10.00776 -8.96928 -8.11106 -6.95830 -6.79933 -3.98973 1.82194 2.45892 3.05752 3.05871 3.10262 3.56775 3.85938 3.86992 4.62407 4.98362 5.00830 5.08032 5.67613 5.76943 6.16907 6.36962 6.58445 6.82483 7.03902 7.12892 7.25999 7.38814 7.49813 7.84907 8.42202 8.51603 9.05725 9.22570 10.34841 Molecular weight = 188.06amu Principal moments of inertia in cm(-1) A = 0.042699 B = 0.012303 C = 0.009583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.589147 B = 2275.291500 C = 2921.038658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C 0.273 3.727 3 C -0.186 4.186 4 C -0.004 4.004 5 C -0.251 4.251 6 C -0.044 4.044 7 C -0.208 4.208 8 C 0.232 3.768 9 N -0.531 5.531 10 C -0.311 4.311 11 H 0.112 0.888 12 C 0.025 3.975 13 N -0.876 5.876 14 Si 0.939 3.061 15 H -0.264 1.264 16 H -0.277 1.277 17 H -0.277 1.277 18 H 0.109 0.891 19 H 0.106 0.894 20 H 0.108 0.892 21 H 0.123 0.877 22 H 0.402 0.598 23 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.296 -3.121 -2.194 8.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.158 5.158 2 C -0.038 4.038 3 C -0.199 4.199 4 C -0.026 4.026 5 C -0.273 4.273 6 C -0.064 4.064 7 C -0.231 4.231 8 C 0.103 3.897 9 N -0.128 5.128 10 C -0.441 4.441 11 H 0.129 0.871 12 C -0.181 4.181 13 N -0.510 5.510 14 Si 0.764 3.236 15 H -0.188 1.188 16 H -0.203 1.203 17 H -0.203 1.203 18 H 0.127 0.873 19 H 0.125 0.875 20 H 0.126 0.874 21 H 0.141 0.859 22 H 0.238 0.762 23 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.371 -2.669 -1.875 6.284 hybrid contribution 0.311 0.708 0.502 0.922 sum 5.682 -1.961 -1.372 6.165 Atomic orbital electron populations 1.81121 1.12441 1.10062 1.12169 1.25856 0.92820 0.92738 0.92394 1.15159 0.83288 1.04953 1.16462 1.20519 0.93947 0.94249 0.93846 1.20246 0.93290 1.03619 1.10180 1.20801 0.98397 0.93130 0.94121 1.20426 0.91753 1.03020 1.07917 1.17625 0.91652 0.88267 0.92162 1.41180 1.08820 1.21697 1.41056 1.19943 0.93426 1.04322 1.26419 0.87059 1.25485 0.95807 0.99118 0.97731 1.69694 1.06521 1.34606 1.40196 0.85659 0.79497 0.79544 0.78886 1.18762 1.20268 1.20276 0.87307 0.87545 0.87409 0.85950 0.76236 0.90950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -11.09 18.54 41.84 0.78 -10.31 14 2 C 0.27 5.97 14.10 -22.47 -0.32 5.65 14 3 C -0.19 -3.81 5.76 -106.57 -0.61 -4.42 14 4 C 0.00 -0.08 9.75 -39.19 -0.38 -0.46 14 5 C -0.25 -4.01 10.02 -39.59 -0.40 -4.41 14 6 C -0.04 -0.72 10.03 -39.54 -0.40 -1.12 14 7 C -0.21 -4.02 9.29 -39.38 -0.37 -4.39 14 8 C 0.23 5.06 6.62 -83.60 -0.55 4.50 14 9 N -0.53 -12.99 5.34 -9.40 -0.05 -13.04 14 10 C -0.31 -7.65 9.55 -15.11 -0.14 -7.79 14 11 H 0.11 2.53 5.67 -52.49 -0.30 2.24 14 12 C 0.02 0.61 5.50 -17.45 -0.10 0.51 14 13 N -0.88 -23.23 13.05 55.49 0.72 -22.50 14 14 Si 0.94 18.92 29.55 -169.99 -5.02 13.89 14 15 H -0.26 -5.07 7.11 56.52 0.40 -4.67 14 16 H -0.28 -5.60 7.11 56.52 0.40 -5.20 14 17 H -0.28 -5.60 7.11 56.52 0.40 -5.20 14 18 H 0.11 1.62 8.06 -52.49 -0.42 1.20 14 19 H 0.11 1.41 8.06 -52.49 -0.42 0.99 14 20 H 0.11 1.44 8.06 -52.49 -0.42 1.02 14 21 H 0.12 2.31 5.95 -52.49 -0.31 2.00 14 22 H 0.40 10.50 6.74 -40.82 -0.28 10.22 14 23 H 0.28 6.95 8.31 -40.82 -0.34 6.62 14 LS Contribution 219.28 15.07 3.30 3.30 Total: -1.00 -26.52 219.28 -4.82 -31.35 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -1.29 Total: 9.22 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -3.27 Total: -11.91 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: 1.45 Total: -45.85 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.02 Total: 13.89 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -26.52 -4.82 -31.35 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020051294.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.051 kcal (2) G-P(sol) polarization free energy of solvation -26.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds