Wall clock time and date at job start Mon Mar 30 2020 02:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 H 1.09008 * 110.11264 * 299.80240 * 9 7 2 11 11 C 1.54393 * 110.13985 * 178.07610 * 9 7 2 12 12 C 1.54893 * 103.71299 * 217.86951 * 11 9 7 13 13 C 1.52489 * 102.94223 * 37.74733 * 12 11 9 14 14 O 1.20762 * 127.60244 * 141.56465 * 13 12 11 15 15 C 1.51864 * 104.79117 * 321.58722 * 13 12 11 16 16 H 1.08994 * 110.03270 * 264.89293 * 15 13 12 17 17 Cl 1.80301 * 109.99493 * 143.57640 * 15 13 12 18 18 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 19 19 H 1.09006 * 110.57110 * 336.42478 * 11 9 7 20 20 H 1.08995 * 110.57809 * 99.30801 * 11 9 7 21 21 H 1.09007 * 110.72124 * 279.38825 * 12 11 9 22 22 H 1.08998 * 110.72525 * 156.11251 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.6232 -2.5696 0.8879 11 6 2.2397 -3.6839 -0.0498 12 6 1.5359 -4.7114 -0.9709 13 6 0.8833 -3.8298 -2.0301 14 8 0.7833 -4.0507 -3.2131 15 6 0.3874 -2.6125 -1.2695 16 1 -0.6599 -2.7434 -0.9973 17 17 0.5808 -1.1325 -2.2811 18 1 -0.4850 0.8401 0.0004 19 1 3.1908 -3.3713 -0.4810 20 1 2.3880 -4.1008 0.9462 21 1 0.7821 -5.2721 -0.4180 22 1 2.2634 -5.3847 -1.4243 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038995746.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:36 Heat of formation + Delta-G solvation = -62.292630 kcal Electronic energy + Delta-G solvation = -9990.727569 eV Core-core repulsion = 7957.082843 eV Total energy + Delta-G solvation = -2033.644726 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 188.034 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.52233 -37.52850 -35.73390 -34.19963 -29.65816 -28.37019 -25.54295 -21.26400 -20.43518 -18.28877 -17.05222 -16.88387 -16.15151 -15.85777 -14.69023 -14.17422 -13.95493 -13.65098 -13.08972 -12.87801 -12.45156 -12.41889 -11.90203 -11.64868 -11.19067 -10.95357 -10.65192 -10.20066 -9.52232 -8.03726 -6.04137 0.79951 1.41333 1.46355 1.51801 2.09633 2.50963 3.25397 3.34940 3.79107 4.16536 4.43323 4.46197 4.81038 4.85411 5.04103 5.13433 5.45311 5.72999 5.93122 6.36207 6.47214 6.93749 7.60771 9.05320 Molecular weight = 188.03amu Principal moments of inertia in cm(-1) A = 0.056333 B = 0.017738 C = 0.015299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.928105 B = 1578.147629 C = 1829.796325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.053 3.947 3 Si 0.923 3.077 4 H -0.274 1.274 5 H -0.274 1.274 6 H -0.294 1.294 7 C -0.533 4.533 8 H 0.052 0.948 9 C 0.037 3.963 10 H 0.037 0.963 11 C -0.104 4.104 12 C -0.161 4.161 13 C 0.364 3.636 14 O -0.472 6.472 15 C -0.041 4.041 16 H 0.100 0.900 17 Cl -0.169 7.169 18 H 0.256 0.744 19 H 0.059 0.941 20 H 0.092 0.908 21 H 0.132 0.868 22 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.776 -6.694 0.937 6.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.149 4.149 3 Si 0.750 3.250 4 H -0.200 1.200 5 H -0.199 1.199 6 H -0.220 1.220 7 C -0.570 4.570 8 H 0.070 0.930 9 C 0.019 3.981 10 H 0.055 0.945 11 C -0.141 4.141 12 C -0.198 4.198 13 C 0.241 3.759 14 O -0.347 6.347 15 C -0.086 4.086 16 H 0.118 0.882 17 Cl -0.142 7.142 18 H 0.065 0.935 19 H 0.078 0.922 20 H 0.111 0.889 21 H 0.150 0.850 22 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.579 -6.567 0.242 6.758 hybrid contribution 0.088 1.487 -0.121 1.494 sum 1.667 -5.080 0.121 5.348 Atomic orbital electron populations 1.70078 1.06642 1.26716 1.49339 1.25231 0.95162 1.00731 0.93812 0.86071 0.79210 0.81656 0.78014 1.19964 1.19933 1.21988 1.21160 0.92656 0.90832 1.52366 0.92960 1.19527 0.93214 0.94536 0.90854 0.94536 1.22376 0.98044 0.93840 0.99862 1.23032 1.02086 0.98157 0.96563 1.26034 0.73160 0.88012 0.88740 1.90325 1.49453 1.76485 1.18413 1.25561 1.03138 0.83798 0.96093 0.88229 1.98624 1.98308 1.45289 1.71999 0.93458 0.92236 0.88928 0.85023 0.87543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.48 10.92 21.45 0.23 -48.24 14 2 C 0.05 2.81 3.61 84.66 0.31 3.12 14 3 Si 0.92 43.22 29.54 68.60 2.03 45.24 14 4 H -0.27 -12.37 7.11 99.48 0.71 -11.66 14 5 H -0.27 -12.77 7.11 99.48 0.71 -12.06 14 6 H -0.29 -13.97 7.11 99.48 0.71 -13.27 14 7 C -0.53 -27.06 7.53 25.60 0.19 -26.87 14 8 H 0.05 2.67 7.56 -2.91 -0.02 2.64 14 9 C 0.04 1.64 2.87 -10.76 -0.03 1.61 14 10 H 0.04 1.67 8.14 -2.38 -0.02 1.65 14 11 C -0.10 -3.43 6.39 31.71 0.20 -3.23 14 12 C -0.16 -4.53 6.79 31.07 0.21 -4.32 14 13 C 0.36 13.96 7.41 30.05 0.22 14.19 14 14 O -0.47 -20.34 17.86 -1.46 -0.03 -20.37 14 15 C -0.04 -1.78 3.45 30.53 0.11 -1.68 14 16 H 0.10 4.31 8.14 -2.39 -0.02 4.30 14 17 Cl -0.17 -8.47 23.14 -2.72 -0.06 -8.54 14 18 H 0.26 13.74 8.31 -92.70 -0.77 12.97 14 19 H 0.06 2.08 7.69 -2.38 -0.02 2.06 14 20 H 0.09 2.57 8.14 -2.39 -0.02 2.55 14 21 H 0.13 2.90 8.14 -2.38 -0.02 2.88 14 22 H 0.11 2.54 8.14 -2.39 -0.02 2.52 14 Total: -1.00 -59.10 205.11 4.59 -54.51 By element: Atomic # 1 Polarization: -6.64 SS G_CDS: 1.21 Total: -5.42 kcal Atomic # 6 Polarization: -18.39 SS G_CDS: 1.21 Total: -17.18 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: 0.23 Total: -48.24 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.03 Total: -20.37 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 17 Polarization: -8.47 SS G_CDS: -0.06 Total: -8.54 kcal Total: -59.10 4.59 -54.51 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038995746.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.785 kcal (2) G-P(sol) polarization free energy of solvation -59.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds