Wall clock time and date at job start Mon Mar 30 2020 01:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99567 * 2 1 4 4 H 1.48499 * 109.47009 * 239.99591 * 3 2 1 5 5 H 1.48496 * 109.47176 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46869 * 120.00081 * 3 2 1 7 7 C 1.37869 * 120.00279 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00063 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00046 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.47460 * 180.02562 * 9 7 2 11 11 N 1.45403 * 110.99996 * 179.97438 * 10 9 7 12 12 C 1.47024 * 110.99385 * 116.31820 * 11 10 9 13 13 C 1.53103 * 109.24985 * 182.34843 * 12 11 10 14 14 O 1.43012 * 109.29295 * 303.21723 * 13 12 11 15 15 C 1.43011 * 113.74271 * 58.65008 * 14 13 12 16 16 C 1.47018 * 110.99571 * 239.99385 * 11 10 9 17 17 H 0.97002 * 120.00221 * 0.02562 * 1 2 3 18 18 H 1.08998 * 109.47355 * 59.99359 * 9 7 2 19 19 H 1.09000 * 109.47106 * 299.99996 * 9 7 2 20 20 H 1.00906 * 110.99358 * 303.94807 * 10 9 7 21 21 H 1.08998 * 109.47369 * 62.43568 * 12 11 10 22 22 H 1.08998 * 109.54483 * 302.29776 * 12 11 10 23 23 H 1.09002 * 109.50635 * 183.25881 * 13 12 11 24 24 H 1.09003 * 109.50698 * 63.17493 * 13 12 11 25 25 H 1.08997 * 109.50806 * 61.26171 * 15 14 13 26 26 H 1.08997 * 109.50924 * 181.35636 * 15 14 13 27 27 H 1.08994 * 109.50209 * 57.67381 * 16 11 10 28 28 H 1.08997 * 109.50514 * 297.54195 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2058 -3.6157 0.0018 11 7 1.5126 -4.8938 0.0024 12 6 1.7970 -5.6479 -1.2273 13 6 1.0033 -6.9570 -1.2115 14 8 1.3348 -7.6964 -0.0331 15 6 1.0693 -6.9915 1.1826 16 6 1.8644 -5.6832 1.1918 17 1 -0.4850 0.8400 -0.0004 18 1 0.6248 -2.5570 -0.8896 19 1 0.6242 -2.5567 0.8903 20 1 2.8412 -3.5489 -0.7793 21 1 2.8630 -5.8691 -1.2795 22 1 1.5046 -5.0554 -2.0942 23 1 1.2551 -7.5459 -2.0936 24 1 -0.0640 -6.7357 -1.2142 25 1 0.0041 -6.7705 1.2500 26 1 1.3681 -7.6056 2.0321 27 1 1.6213 -5.1158 2.0900 28 1 2.9313 -5.9056 1.1784 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039136750.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:00 Heat of formation + Delta-G solvation = -38.152565 kcal Electronic energy + Delta-G solvation = -11535.102853 eV Core-core repulsion = 9393.066173 eV Total energy + Delta-G solvation = -2142.036680 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.111 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.31720 -37.16676 -35.11544 -32.70036 -32.15663 -28.69203 -26.15401 -24.95101 -23.40645 -21.48119 -18.82115 -17.64685 -17.13376 -16.74879 -16.26113 -15.97661 -15.57021 -15.48488 -14.55388 -14.26272 -13.64352 -13.34538 -12.80808 -12.71430 -12.52523 -12.34080 -12.14164 -11.74020 -11.40850 -10.73994 -10.71060 -10.13903 -8.99370 -8.24681 -6.37774 1.41403 1.45446 1.53511 2.25951 2.50972 2.90075 3.08978 3.77969 3.87678 4.11523 4.18275 4.30018 4.42091 4.57446 4.68955 4.77823 4.93150 4.96123 5.16332 5.30346 5.61136 5.83100 6.01619 6.09850 6.23917 6.76088 6.86750 7.33001 8.87160 Molecular weight = 186.11amu Principal moments of inertia in cm(-1) A = 0.091046 B = 0.008009 C = 0.007965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 307.462429 B = 3495.339335 C = 3514.496694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.006 3.994 3 Si 0.978 3.022 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.543 4.543 8 H 0.066 0.934 9 C 0.228 3.772 10 N -0.526 5.526 11 N -0.406 5.406 12 C -0.006 4.006 13 C 0.072 3.928 14 O -0.396 6.396 15 C 0.070 3.930 16 C 0.033 3.967 17 H 0.267 0.733 18 H -0.038 1.038 19 H 0.000 1.000 20 H 0.326 0.674 21 H 0.048 0.952 22 H 0.078 0.922 23 H 0.127 0.873 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.129 0.871 27 H 0.076 0.924 28 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.009 -11.432 -0.981 11.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.193 4.193 3 Si 0.802 3.198 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.582 4.582 8 H 0.084 0.916 9 C 0.100 3.900 10 N -0.247 5.247 11 N -0.222 5.222 12 C -0.135 4.135 13 C -0.005 4.005 14 O -0.314 6.314 15 C -0.008 4.008 16 C -0.095 4.095 17 H 0.076 0.924 18 H -0.020 1.020 19 H 0.018 0.982 20 H 0.143 0.857 21 H 0.066 0.934 22 H 0.097 0.903 23 H 0.145 0.855 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.146 0.854 27 H 0.095 0.905 28 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.505 -11.408 -0.275 11.683 hybrid contribution 0.564 1.157 -0.962 1.607 sum 3.069 -10.252 -1.237 10.772 Atomic orbital electron populations 1.70106 1.07916 1.28264 1.50811 1.25955 0.95779 1.03384 0.94215 0.85310 0.78036 0.77244 0.79222 1.18984 1.20662 1.19234 1.21434 0.93848 0.91126 1.51768 0.91620 1.19079 0.90553 0.86840 0.93505 1.64048 1.16798 0.96480 1.47337 1.65345 1.53465 1.00372 1.02997 1.23292 0.99849 0.96855 0.93522 1.22730 0.98399 0.90479 0.88929 1.87918 1.86510 1.42340 1.14679 1.22823 0.99039 0.91180 0.87741 1.22742 0.98697 0.94407 0.93703 0.92436 1.02023 0.98207 0.85738 0.93388 0.90309 0.85497 0.92386 0.92364 0.85362 0.90531 0.94187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.77 13.29 21.44 0.28 -56.49 15 2 C 0.01 0.32 5.46 84.65 0.46 0.78 15 3 Si 0.98 44.13 29.54 68.60 2.03 46.16 15 4 H -0.27 -11.39 7.11 99.48 0.71 -10.69 15 5 H -0.28 -12.35 7.11 99.48 0.71 -11.64 15 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 15 7 C -0.54 -31.33 9.32 25.60 0.24 -31.10 15 8 H 0.07 3.64 7.81 -2.91 -0.02 3.62 15 9 C 0.23 12.74 5.89 85.56 0.50 13.25 15 10 N -0.53 -24.07 6.74 -190.01 -1.28 -25.35 15 11 N -0.41 -15.78 4.85 -512.96 -2.49 -18.27 15 12 C -0.01 -0.18 5.63 86.31 0.49 0.30 15 13 C 0.07 1.84 7.01 72.02 0.50 2.35 15 14 O -0.40 -10.85 10.83 -148.98 -1.61 -12.46 15 15 C 0.07 1.82 7.01 72.02 0.50 2.32 15 16 C 0.03 1.09 6.12 86.31 0.53 1.62 15 17 H 0.27 15.20 8.31 -92.71 -0.77 14.43 15 18 H -0.04 -2.30 8.14 -2.39 -0.02 -2.32 15 19 H 0.00 -0.02 8.14 -2.39 -0.02 -0.03 15 20 H 0.33 14.06 8.13 -204.84 -1.67 12.39 15 21 H 0.05 1.44 8.14 -2.39 -0.02 1.42 15 22 H 0.08 2.49 8.14 -2.39 -0.02 2.47 15 23 H 0.13 2.41 8.14 -2.39 -0.02 2.39 15 24 H 0.06 1.50 8.14 -2.39 -0.02 1.48 15 25 H 0.06 1.53 8.14 -2.39 -0.02 1.51 15 26 H 0.13 2.52 8.14 -2.39 -0.02 2.50 15 27 H 0.08 2.67 8.14 -2.39 -0.02 2.65 15 28 H 0.04 1.30 8.14 -2.39 -0.02 1.28 15 Total: -1.00 -65.98 238.66 -0.38 -66.36 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -0.53 Total: 10.52 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: 3.23 Total: -10.47 kcal Atomic # 7 Polarization: -96.62 SS G_CDS: -3.48 Total: -100.11 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: -1.61 Total: -12.46 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -65.98 -0.38 -66.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039136750.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.208 kcal (2) G-P(sol) polarization free energy of solvation -65.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds