Wall clock time and date at job start Mon Mar 30 2020 02:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86803 * 119.99927 * 2 1 4 4 H 1.48497 * 109.47028 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.46980 * 120.00129 * 3 2 1 6 6 H 1.48505 * 109.46521 * 240.00135 * 3 2 1 7 7 C 1.39854 * 119.99828 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99893 * 3.82038 * 7 2 1 9 9 C 1.41507 * 119.99875 * 183.81811 * 7 2 1 10 10 C 1.40908 * 125.83873 * 186.15562 * 9 7 2 11 11 C 1.38340 * 107.46785 * 179.97438 * 10 9 7 12 12 C 1.41150 * 132.53953 * 179.97438 * 11 10 9 13 13 C 1.36012 * 119.23029 * 180.02562 * 12 11 10 14 14 C 1.40496 * 119.59218 * 0.02562 * 13 12 11 15 15 C 1.35036 * 120.47319 * 359.95528 * 14 13 12 16 16 N 1.36413 * 120.73872 * 0.04920 * 15 14 13 17 17 N 1.33248 * 125.83467 * 5.84075 * 9 7 2 18 18 H 0.97003 * 119.99991 * 174.81997 * 1 2 3 19 19 H 1.08004 * 126.26581 * 359.97438 * 10 9 7 20 20 H 1.07999 * 120.38021 * 0.02825 * 12 11 10 21 21 H 1.08002 * 120.19938 * 180.02562 * 13 12 11 22 22 H 1.07997 * 119.75732 * 179.97438 * 14 13 12 23 23 H 1.07996 * 119.62708 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 1.2778 2.7464 -0.0006 5 1 3.0966 1.6964 1.2125 6 1 3.0965 1.6963 -1.2126 7 6 2.0081 -1.2112 0.0005 8 1 1.4698 -2.1455 -0.0614 9 6 3.4208 -1.2125 0.0821 10 6 4.2526 -2.3444 -0.0298 11 6 5.5602 -1.9138 0.1062 12 6 6.7965 -2.5945 0.0817 13 6 7.9470 -1.8883 0.2480 14 6 7.8858 -0.4980 0.4413 15 6 6.6953 0.1388 0.4618 16 7 5.5314 -0.5533 0.2968 17 7 4.1922 -0.1428 0.2721 18 1 -0.4850 -0.8366 -0.0758 19 1 3.9286 -3.3618 -0.1921 20 1 6.8285 -3.6637 -0.0674 21 1 8.9016 -2.3932 0.2316 22 1 8.7976 0.0653 0.5740 23 1 6.6642 1.2080 0.6110 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074342362.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:15 Heat of formation + Delta-G solvation = 81.221645 kcal Electronic energy + Delta-G solvation = -10777.946870 eV Core-core repulsion = 8785.250991 eV Total energy + Delta-G solvation = -1992.695879 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 188.064 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.58962 -36.27155 -33.46905 -31.96099 -29.96173 -27.41607 -25.73858 -22.48141 -21.50419 -19.63555 -18.03813 -16.42973 -15.63987 -15.04412 -14.38841 -13.94186 -13.74057 -12.75608 -12.62487 -12.02208 -11.41550 -11.25552 -10.99716 -10.57492 -10.39004 -9.73619 -9.63378 -9.12900 -8.50792 -8.23400 -7.23568 -6.67041 -4.70467 1.57391 2.04657 3.21420 3.43310 3.64797 4.01471 4.05518 4.25437 4.39668 5.12825 5.26454 5.32092 5.60230 5.64749 5.88389 6.32143 6.53594 6.65850 6.74685 6.98022 7.18817 7.34736 7.59046 7.89403 8.26766 8.36231 8.72865 9.14257 10.12876 Molecular weight = 188.06amu Principal moments of inertia in cm(-1) A = 0.066756 B = 0.013483 C = 0.011286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.338046 B = 2076.242230 C = 2480.319654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.050 3.950 3 Si 1.105 2.895 4 H -0.306 1.306 5 H -0.263 1.263 6 H -0.280 1.280 7 C -0.480 4.480 8 H 0.084 0.916 9 C 0.229 3.771 10 C -0.323 4.323 11 C 0.097 3.903 12 C -0.144 4.144 13 C -0.087 4.087 14 C -0.232 4.232 15 C 0.135 3.865 16 N -0.282 5.282 17 N -0.433 5.433 18 H 0.283 0.717 19 H 0.130 0.870 20 H 0.129 0.871 21 H 0.122 0.878 22 H 0.135 0.865 23 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.395 -1.021 0.284 11.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.170 4.170 3 Si 0.935 3.065 4 H -0.236 1.236 5 H -0.190 1.190 6 H -0.207 1.207 7 C -0.518 4.518 8 H 0.103 0.897 9 C 0.089 3.911 10 C -0.352 4.352 11 C -0.016 4.016 12 C -0.165 4.165 13 C -0.110 4.110 14 C -0.255 4.255 15 C 0.003 3.997 16 N -0.044 5.044 17 N -0.271 5.271 18 H 0.094 0.906 19 H 0.148 0.852 20 H 0.147 0.853 21 H 0.140 0.860 22 H 0.153 0.847 23 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 10.952 1.749 0.510 11.103 hybrid contribution 0.174 -2.812 -0.205 2.825 sum 11.127 -1.063 0.305 11.181 Atomic orbital electron populations 1.70658 1.07767 1.32583 1.33554 1.27359 0.95586 1.05045 0.89053 0.82813 0.72419 0.71187 0.80105 1.23552 1.18954 1.20695 1.19998 0.88122 0.96400 1.47268 0.89749 1.19622 0.94314 0.88937 0.88251 1.21339 0.89490 0.99594 1.24818 1.19435 0.95329 0.84869 1.01925 1.20435 0.89966 0.99720 1.06341 1.20803 0.97707 0.93915 0.98583 1.20326 0.96091 0.95235 1.13833 1.21259 0.82928 0.97959 0.97579 1.46250 1.06246 1.05672 1.46275 1.77730 0.81689 1.20063 1.47637 0.90630 0.85173 0.85333 0.85968 0.84700 0.83163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.14 13.66 55.54 0.76 -22.39 14 2 C 0.05 1.40 5.51 -17.35 -0.10 1.31 14 3 Si 1.11 28.00 25.85 -169.99 -4.40 23.60 14 4 H -0.31 -7.45 7.11 56.52 0.40 -7.05 14 5 H -0.26 -6.69 6.76 56.52 0.38 -6.31 14 6 H -0.28 -7.15 7.11 56.52 0.40 -6.75 14 7 C -0.48 -13.74 9.83 -37.73 -0.37 -14.11 14 8 H 0.08 2.40 8.05 -52.49 -0.42 1.98 14 9 C 0.23 6.38 6.48 -85.00 -0.55 5.83 14 10 C -0.32 -8.04 10.88 -38.53 -0.42 -8.46 14 11 C 0.10 2.21 6.78 -84.22 -0.57 1.64 14 12 C -0.14 -2.56 10.12 -39.28 -0.40 -2.96 14 13 C -0.09 -1.31 10.07 -39.53 -0.40 -1.71 14 14 C -0.23 -3.51 9.98 -39.87 -0.40 -3.91 14 15 C 0.14 2.51 11.18 -16.65 -0.19 2.32 14 16 N -0.28 -6.66 3.89 -10.70 -0.04 -6.70 14 17 N -0.43 -11.76 7.88 32.16 0.25 -11.51 14 18 H 0.28 7.63 8.72 -40.82 -0.36 7.27 14 19 H 0.13 2.95 8.06 -52.48 -0.42 2.52 14 20 H 0.13 1.93 8.06 -52.49 -0.42 1.50 14 21 H 0.12 1.39 8.06 -52.49 -0.42 0.96 14 22 H 0.14 1.53 8.06 -52.49 -0.42 1.11 14 23 H 0.15 2.38 8.06 -52.49 -0.42 1.96 14 LS Contribution 210.14 15.07 3.17 3.17 Total: -1.00 -31.34 210.14 -5.35 -36.69 By element: Atomic # 1 Polarization: -1.10 SS G_CDS: -1.71 Total: -2.81 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: -3.39 Total: -20.05 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: 0.97 Total: -40.60 kcal Atomic # 14 Polarization: 28.00 SS G_CDS: -4.40 Total: 23.60 kcal Total LS contribution 3.17 Total: 3.17 kcal Total: -31.34 -5.35 -36.69 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074342362.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.916 kcal (2) G-P(sol) polarization free energy of solvation -31.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds