Wall clock time and date at job start Mon Mar 30 2020 02:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86803 * 119.99927 * 2 1 4 4 H 1.48497 * 109.47028 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.46980 * 120.00129 * 3 2 1 6 6 H 1.48505 * 109.46521 * 240.00135 * 3 2 1 7 7 C 1.39854 * 119.99828 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99893 * 3.82038 * 7 2 1 9 9 C 1.41507 * 119.99875 * 183.81811 * 7 2 1 10 10 C 1.40908 * 125.83873 * 186.15562 * 9 7 2 11 11 C 1.38340 * 107.46785 * 179.97438 * 10 9 7 12 12 C 1.41150 * 132.53953 * 179.97438 * 11 10 9 13 13 C 1.36012 * 119.23029 * 180.02562 * 12 11 10 14 14 C 1.40496 * 119.59218 * 0.02562 * 13 12 11 15 15 C 1.35036 * 120.47319 * 359.95528 * 14 13 12 16 16 N 1.36413 * 120.73872 * 0.04920 * 15 14 13 17 17 N 1.33248 * 125.83467 * 5.84075 * 9 7 2 18 18 H 0.97003 * 119.99991 * 174.81997 * 1 2 3 19 19 H 1.08004 * 126.26581 * 359.97438 * 10 9 7 20 20 H 1.07999 * 120.38021 * 0.02825 * 12 11 10 21 21 H 1.08002 * 120.19938 * 180.02562 * 13 12 11 22 22 H 1.07997 * 119.75732 * 179.97438 * 14 13 12 23 23 H 1.07996 * 119.62708 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 1.2778 2.7464 -0.0006 5 1 3.0966 1.6964 1.2125 6 1 3.0965 1.6963 -1.2126 7 6 2.0081 -1.2112 0.0005 8 1 1.4698 -2.1455 -0.0614 9 6 3.4208 -1.2125 0.0821 10 6 4.2526 -2.3444 -0.0298 11 6 5.5602 -1.9138 0.1062 12 6 6.7965 -2.5945 0.0817 13 6 7.9470 -1.8883 0.2480 14 6 7.8858 -0.4980 0.4413 15 6 6.6953 0.1388 0.4618 16 7 5.5314 -0.5533 0.2968 17 7 4.1922 -0.1428 0.2721 18 1 -0.4850 -0.8366 -0.0758 19 1 3.9286 -3.3618 -0.1921 20 1 6.8285 -3.6637 -0.0674 21 1 8.9016 -2.3932 0.2316 22 1 8.7976 0.0653 0.5740 23 1 6.6642 1.2080 0.6110 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074342362.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:15 Heat of formation + Delta-G solvation = 60.275063 kcal Electronic energy + Delta-G solvation = -10778.855182 eV Core-core repulsion = 8785.250991 eV Total energy + Delta-G solvation = -1993.604191 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 188.064 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.30140 -37.91941 -35.46519 -33.54962 -31.70945 -29.13593 -27.60819 -24.00033 -23.18416 -21.55325 -20.00572 -18.07912 -17.18739 -16.44015 -16.14438 -15.72994 -15.55556 -14.59091 -14.42202 -13.81244 -13.27860 -12.77151 -12.53613 -12.32567 -12.13764 -11.73670 -11.43251 -11.05486 -10.45388 -10.04269 -9.37498 -8.37653 -6.80279 0.14482 0.47832 1.34572 1.41240 1.69890 2.05670 2.11408 2.45283 2.72818 3.20085 3.68303 4.01153 4.13646 4.37769 4.45891 4.81700 5.05712 5.09303 5.21066 5.41666 5.44480 5.51523 5.74164 6.01686 6.32327 6.45633 6.71177 7.19937 8.00182 Molecular weight = 188.06amu Principal moments of inertia in cm(-1) A = 0.066756 B = 0.013483 C = 0.011286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.338046 B = 2076.242230 C = 2480.319654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.019 3.981 3 Si 1.147 2.853 4 H -0.292 1.292 5 H -0.268 1.268 6 H -0.287 1.287 7 C -0.517 4.517 8 H 0.064 0.936 9 C 0.211 3.789 10 C -0.380 4.380 11 C 0.105 3.895 12 C -0.157 4.157 13 C -0.062 4.062 14 C -0.184 4.184 15 C 0.089 3.911 16 N -0.296 5.296 17 N -0.461 5.461 18 H 0.279 0.721 19 H 0.134 0.866 20 H 0.157 0.843 21 H 0.180 0.820 22 H 0.192 0.808 23 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.273 -0.746 0.545 16.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.196 4.196 3 Si 0.974 3.026 4 H -0.221 1.221 5 H -0.195 1.195 6 H -0.215 1.215 7 C -0.555 4.555 8 H 0.083 0.917 9 C 0.069 3.931 10 C -0.408 4.408 11 C -0.011 4.011 12 C -0.177 4.177 13 C -0.085 4.085 14 C -0.206 4.206 15 C -0.040 4.040 16 N -0.060 5.060 17 N -0.298 5.298 18 H 0.089 0.911 19 H 0.152 0.848 20 H 0.175 0.825 21 H 0.198 0.802 22 H 0.209 0.791 23 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 15.848 2.045 0.778 15.998 hybrid contribution -0.759 -2.974 -0.252 3.080 sum 15.088 -0.929 0.526 15.126 Atomic orbital electron populations 1.70682 1.07939 1.32320 1.36154 1.28177 0.95900 1.06880 0.88642 0.82267 0.71544 0.69472 0.79322 1.22104 1.19476 1.21460 1.19969 0.89288 0.95942 1.50314 0.91738 1.19693 0.94215 0.90532 0.88676 1.21410 0.90718 0.99413 1.29303 1.19923 0.96291 0.84836 1.00084 1.20907 0.88679 1.01469 1.06628 1.21557 0.98972 0.93846 0.94108 1.21191 0.96455 0.95751 1.07157 1.22119 0.82439 0.99660 0.99738 1.46426 1.06231 1.06605 1.46690 1.77464 0.83880 1.20580 1.47892 0.91070 0.84825 0.82496 0.80239 0.79123 0.81123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -50.05 13.66 21.81 0.30 -49.75 14 2 C 0.02 1.12 5.51 85.23 0.47 1.59 14 3 Si 1.15 59.00 25.85 68.60 1.77 60.77 14 4 H -0.29 -14.06 7.11 99.48 0.71 -13.35 14 5 H -0.27 -13.78 6.76 99.48 0.67 -13.10 14 6 H -0.29 -14.85 7.11 99.48 0.71 -14.14 14 7 C -0.52 -31.66 9.83 23.47 0.23 -31.43 14 8 H 0.06 4.01 8.05 -2.91 -0.02 3.99 14 9 C 0.21 12.27 6.48 40.39 0.26 12.54 14 10 C -0.38 -19.53 10.88 22.95 0.25 -19.28 14 11 C 0.10 4.61 6.78 39.01 0.26 4.87 14 12 C -0.16 -4.84 10.12 22.47 0.23 -4.61 14 13 C -0.06 -1.38 10.07 22.30 0.22 -1.16 14 14 C -0.18 -4.18 9.98 22.08 0.22 -3.96 14 15 C 0.09 2.92 11.18 83.24 0.93 3.85 14 16 N -0.30 -13.54 3.89 -187.77 -0.73 -14.27 14 17 N -0.46 -25.43 7.88 -52.17 -0.41 -25.84 14 18 H 0.28 16.06 8.72 -92.71 -0.81 15.25 14 19 H 0.13 6.41 8.06 -2.91 -0.02 6.38 14 20 H 0.16 3.92 8.06 -2.91 -0.02 3.90 14 21 H 0.18 2.20 8.06 -2.91 -0.02 2.18 14 22 H 0.19 2.41 8.06 -2.91 -0.02 2.38 14 23 H 0.17 4.76 8.06 -2.91 -0.02 4.73 14 Total: -1.00 -73.61 210.14 5.15 -68.47 By element: Atomic # 1 Polarization: -2.92 SS G_CDS: 1.14 Total: -1.78 kcal Atomic # 6 Polarization: -40.67 SS G_CDS: 3.08 Total: -37.59 kcal Atomic # 7 Polarization: -89.02 SS G_CDS: -0.84 Total: -89.86 kcal Atomic # 14 Polarization: 59.00 SS G_CDS: 1.77 Total: 60.77 kcal Total: -73.61 5.15 -68.47 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074342362.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.743 kcal (2) G-P(sol) polarization free energy of solvation -73.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds