Wall clock time and date at job start Mon Mar 30 2020 01:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00134 * 2 1 4 4 H 1.48500 * 109.47585 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47264 * 300.00436 * 3 2 1 6 6 H 1.48499 * 109.47031 * 60.00051 * 3 2 1 7 7 C 1.38808 * 120.00268 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00535 * 196.92027 * 7 2 1 9 9 N 1.36940 * 120.00036 * 16.91565 * 7 2 1 10 10 C 1.47158 * 120.97802 * 26.23937 * 9 7 2 11 11 C 1.53301 * 108.41588 * 129.46580 * 10 9 7 12 12 O 1.43042 * 109.17731 * 52.28699 * 11 10 9 13 13 C 1.42970 * 114.18486 * 297.43706 * 12 11 10 14 14 H 1.09001 * 109.50977 * 302.65844 * 13 12 11 15 15 C 1.52997 * 109.55150 * 182.53256 * 13 12 11 16 16 N 1.46901 * 109.46935 * 65.22955 * 15 13 12 17 17 C 1.47145 * 120.98820 * 206.25945 * 9 7 2 18 18 H 0.97003 * 119.99665 * 359.97438 * 1 2 3 19 19 H 1.08999 * 109.67778 * 249.20694 * 10 9 7 20 20 H 1.09002 * 109.68327 * 9.72192 * 10 9 7 21 21 H 1.08994 * 109.51105 * 172.24238 * 11 10 9 22 22 H 1.09001 * 109.51105 * 292.39693 * 11 10 9 23 23 H 1.09006 * 109.46919 * 185.22303 * 15 13 12 24 24 H 1.08998 * 109.47683 * 305.23103 * 15 13 12 25 25 H 1.00899 * 111.00399 * 56.04710 * 16 15 13 26 26 H 1.00900 * 111.00173 * 179.97438 * 16 15 13 27 27 H 1.09006 * 109.67967 * 350.23671 * 17 9 7 28 28 H 1.08993 * 109.68440 * 110.75507 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0552 -1.2225 0.2716 9 7 1.3701 -2.3622 -0.3461 10 6 0.1977 -2.3444 -1.2353 11 6 0.4243 -3.3655 -2.3561 12 8 0.7652 -4.6291 -1.7788 13 6 1.9814 -4.6207 -1.0273 14 1 2.8006 -4.2870 -1.6642 15 6 2.2755 -6.0315 -0.5134 16 7 2.5349 -6.9230 -1.6518 17 6 1.8338 -3.6634 0.1609 18 1 -0.4850 0.8401 0.0004 19 1 -0.6954 -2.6116 -0.6704 20 1 0.0770 -1.3495 -1.6639 21 1 -0.4869 -3.4674 -2.9454 22 1 1.2379 -3.0271 -2.9977 23 1 3.1511 -6.0066 0.1354 24 1 1.4172 -6.3999 0.0484 25 1 3.2854 -6.5682 -2.2254 26 1 2.7324 -7.8615 -1.3384 27 1 2.7972 -3.5421 0.6564 28 1 1.1058 -4.0630 0.8668 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082632083.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:02 Heat of formation + Delta-G solvation = -22.268753 kcal Electronic energy + Delta-G solvation = -11941.131116 eV Core-core repulsion = 9799.783210 eV Total energy + Delta-G solvation = -2141.347906 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.39811 -34.69960 -34.01260 -31.24339 -29.94609 -27.05236 -24.52871 -23.01822 -21.33643 -19.62057 -16.81981 -16.07535 -15.37327 -14.91605 -14.33515 -14.07546 -13.74324 -13.30014 -13.00652 -12.57191 -12.11082 -11.32470 -11.08263 -10.80206 -10.61223 -10.28590 -10.19744 -9.92276 -9.50065 -8.88296 -8.50507 -8.47986 -6.69735 -5.81002 -3.24553 3.34922 3.42451 3.44833 4.40967 4.49534 4.77329 5.32862 5.38120 5.61450 5.62568 5.84489 5.99282 6.15602 6.28924 6.44198 6.47982 6.60406 6.82947 7.16992 7.30154 7.58010 7.58914 7.73571 8.09232 8.37266 9.14899 9.78032 10.35785 11.26799 Molecular weight = 186.11amu Principal moments of inertia in cm(-1) A = 0.069997 B = 0.011209 C = 0.010384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.918416 B = 2497.412971 C = 2695.844933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.254 4.254 8 H 0.068 0.932 9 N -0.596 5.596 10 C 0.140 3.860 11 C 0.038 3.962 12 O -0.377 6.377 13 C 0.080 3.920 14 H 0.047 0.953 15 C 0.071 3.929 16 N -0.843 5.843 17 C 0.118 3.882 18 H 0.254 0.746 19 H 0.027 0.973 20 H 0.092 0.908 21 H 0.079 0.921 22 H 0.037 0.963 23 H 0.037 0.963 24 H 0.077 0.923 25 H 0.337 0.663 26 H 0.335 0.665 27 H 0.058 0.942 28 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.259 -8.013 -2.331 9.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.383 4.383 8 H 0.086 0.914 9 N -0.320 5.320 10 C 0.014 3.986 11 C -0.040 4.040 12 O -0.295 6.295 13 C 0.020 3.980 14 H 0.065 0.935 15 C -0.060 4.060 16 N -0.372 5.372 17 C -0.009 4.009 18 H 0.064 0.936 19 H 0.045 0.955 20 H 0.111 0.889 21 H 0.098 0.902 22 H 0.056 0.944 23 H 0.055 0.945 24 H 0.096 0.904 25 H 0.149 0.851 26 H 0.146 0.854 27 H 0.077 0.923 28 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 3.291 -7.841 -2.549 8.877 hybrid contribution 1.458 1.080 0.506 1.883 sum 4.749 -6.761 -2.043 8.511 Atomic orbital electron populations 1.70053 1.05281 1.25477 1.53932 1.25045 0.95342 0.98445 1.00906 0.86187 0.79277 0.83758 0.77341 1.20254 1.21470 1.21642 1.19243 0.92601 0.84605 1.41869 0.91441 1.44086 1.33701 1.01050 1.53141 1.21449 0.89008 0.98330 0.89818 1.23299 0.98872 0.85345 0.96484 1.87873 1.40842 1.31603 1.69228 1.22530 0.87487 0.93884 0.94093 0.93511 1.21784 0.99883 0.92408 0.91967 1.58604 1.50551 1.05148 1.22897 1.21533 0.98386 0.87466 0.93508 0.93583 0.95504 0.88940 0.90242 0.94435 0.94511 0.90421 0.85130 0.85366 0.92326 0.95605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.57 11.14 55.49 0.62 -25.95 15 2 C 0.00 0.03 4.95 -17.43 -0.09 -0.05 15 3 Si 0.90 21.76 29.59 -169.99 -5.03 16.73 15 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 15 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 15 7 C -0.25 -7.11 9.65 -15.06 -0.15 -7.26 15 8 H 0.07 1.84 7.88 -52.49 -0.41 1.43 15 9 N -0.60 -15.61 3.05 -171.83 -0.52 -16.14 15 10 C 0.14 3.51 5.44 -3.53 -0.02 3.49 15 11 C 0.04 0.81 6.99 37.31 0.26 1.07 15 12 O -0.38 -8.04 10.34 -35.23 -0.36 -8.41 15 13 C 0.08 1.54 2.96 -26.58 -0.08 1.47 15 14 H 0.05 0.92 8.14 -51.93 -0.42 0.49 15 15 C 0.07 1.08 6.46 -3.83 -0.02 1.06 15 16 N -0.84 -11.45 9.58 -10.37 -0.10 -11.55 15 17 C 0.12 2.60 6.02 -3.54 -0.02 2.58 15 18 H 0.25 7.17 8.31 -40.82 -0.34 6.83 15 19 H 0.03 0.72 8.14 -51.93 -0.42 0.30 15 20 H 0.09 2.52 6.14 -51.93 -0.32 2.20 15 21 H 0.08 1.50 8.14 -51.93 -0.42 1.07 15 22 H 0.04 0.79 8.14 -51.93 -0.42 0.36 15 23 H 0.04 0.49 8.14 -51.93 -0.42 0.07 15 24 H 0.08 1.22 8.14 -51.93 -0.42 0.80 15 25 H 0.34 4.18 8.99 -39.29 -0.35 3.83 15 26 H 0.33 3.58 9.08 -39.29 -0.36 3.23 15 27 H 0.06 1.21 7.96 -51.93 -0.41 0.80 15 28 H 0.03 0.59 8.14 -51.93 -0.42 0.16 15 LS Contribution 232.83 15.07 3.51 3.51 Total: -1.00 -31.16 232.83 -5.95 -37.11 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -3.95 Total: 2.34 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -0.11 Total: 2.35 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: -0.01 Total: -53.63 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: -0.36 Total: -8.41 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -31.16 -5.95 -37.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082632083.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.841 kcal (2) G-P(sol) polarization free energy of solvation -31.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds