Wall clock time and date at job start Mon Mar 30 2020 02:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00361 * 2 1 4 4 H 1.48498 * 109.47035 * 270.00086 * 3 2 1 5 5 H 1.48500 * 109.46758 * 29.99732 * 3 2 1 6 6 H 1.48497 * 109.47204 * 149.99874 * 3 2 1 7 7 C 1.38813 * 119.99668 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00200 * 196.91837 * 7 2 1 9 9 N 1.36943 * 120.00188 * 16.92540 * 7 2 1 10 10 C 1.47151 * 120.98101 * 26.20659 * 9 7 2 11 11 C 1.53292 * 108.38514 * 129.48814 * 10 9 7 12 12 O 1.42965 * 109.26438 * 52.27652 * 11 10 9 13 13 C 1.42956 * 114.16922 * 297.50532 * 12 11 10 14 14 H 1.09003 * 109.51019 * 302.54431 * 13 12 11 15 15 C 1.53001 * 109.51272 * 182.44493 * 13 12 11 16 16 O 1.42904 * 109.47086 * 65.09897 * 15 13 12 17 17 C 1.47151 * 120.98164 * 206.23343 * 9 7 2 18 18 H 0.97008 * 120.00141 * 359.97438 * 1 2 3 19 19 H 1.08998 * 109.68116 * 249.21632 * 10 9 7 20 20 H 1.08999 * 109.68059 * 9.76721 * 10 9 7 21 21 H 1.09002 * 109.51788 * 172.22404 * 11 10 9 22 22 H 1.08997 * 109.51544 * 292.33030 * 11 10 9 23 23 H 1.08996 * 109.47497 * 185.10076 * 15 13 12 24 24 H 1.08999 * 109.46786 * 305.09982 * 15 13 12 25 25 H 0.96697 * 113.99591 * 180.02562 * 16 15 13 26 26 H 1.09003 * 109.68092 * 110.78656 * 17 9 7 27 27 H 1.09005 * 109.71178 * 350.25150 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0101 -1.2022 0.0005 8 1 3.0551 -1.2224 0.2727 9 7 1.3699 -2.3626 -0.3442 10 6 0.1972 -2.3455 -1.2329 11 6 0.4241 -3.3677 -2.3525 12 8 0.7653 -4.6306 -1.7761 13 6 1.9810 -4.6215 -1.0240 14 1 2.8006 -4.2886 -1.6609 15 6 2.2742 -6.0321 -0.5093 16 8 2.5239 -6.9008 -1.6162 17 6 1.8339 -3.6634 0.1636 18 1 -0.4851 0.8401 0.0004 19 1 -0.6958 -2.6122 -0.6677 20 1 0.0768 -1.3510 -1.6627 21 1 -0.4872 -3.4707 -2.9417 22 1 1.2368 -3.0294 -2.9952 23 1 3.1506 -6.0078 0.1383 24 1 1.4162 -6.3989 0.0541 25 1 2.7172 -7.8139 -1.3637 26 1 1.1057 -4.0629 0.8695 27 1 2.7972 -3.5422 0.6591 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082693876.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:18 Heat of formation + Delta-G solvation = -72.009289 kcal Electronic energy + Delta-G solvation = -12030.912521 eV Core-core repulsion = 9789.689041 eV Total energy + Delta-G solvation = -2241.223480 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 187.100 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.51094 -36.25616 -34.34515 -31.60284 -30.65919 -27.40664 -25.21343 -23.09290 -21.61775 -19.64420 -17.08075 -16.83145 -15.89922 -15.06135 -14.39051 -14.36146 -13.60569 -13.44377 -13.15941 -12.62582 -12.33954 -11.31166 -11.07191 -10.80589 -10.64784 -10.32292 -10.22076 -9.95974 -9.84636 -9.53540 -8.94429 -8.52325 -6.73553 -5.82888 -3.26771 3.35608 3.42089 3.43567 4.35246 4.40729 4.58084 5.32866 5.37835 5.53898 5.57801 5.84589 5.96144 6.06522 6.25184 6.39979 6.43811 6.55457 6.77595 7.15987 7.54904 7.72013 7.82177 8.01818 8.34959 9.12625 9.75388 10.32776 11.25138 Molecular weight = 187.10amu Principal moments of inertia in cm(-1) A = 0.070627 B = 0.011090 C = 0.010270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.356249 B = 2524.183471 C = 2725.752999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.256 4.256 8 H 0.069 0.931 9 N -0.594 5.594 10 C 0.139 3.861 11 C 0.038 3.962 12 O -0.385 6.385 13 C 0.076 3.924 14 H 0.057 0.943 15 C 0.086 3.914 16 O -0.568 6.568 17 C 0.121 3.879 18 H 0.255 0.745 19 H 0.028 0.972 20 H 0.094 0.906 21 H 0.080 0.920 22 H 0.040 0.960 23 H 0.057 0.943 24 H 0.051 0.949 25 H 0.371 0.629 26 H 0.027 0.973 27 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.257 -8.356 -1.325 9.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.385 4.385 8 H 0.087 0.913 9 N -0.318 5.318 10 C 0.014 3.986 11 C -0.039 4.039 12 O -0.304 6.304 13 C 0.017 3.983 14 H 0.075 0.925 15 C 0.008 3.992 16 O -0.372 6.372 17 C -0.006 4.006 18 H 0.065 0.935 19 H 0.046 0.954 20 H 0.112 0.888 21 H 0.099 0.901 22 H 0.058 0.942 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.217 0.783 26 H 0.045 0.955 27 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.927 -7.789 -1.656 8.484 hybrid contribution 0.595 0.654 0.416 0.977 sum 3.522 -7.135 -1.240 8.053 Atomic orbital electron populations 1.70040 1.05297 1.25657 1.53757 1.25049 0.95361 0.98483 1.00768 0.86219 0.79037 0.83333 0.77758 1.21338 1.21662 1.20373 1.19228 0.92670 0.84514 1.42107 0.91321 1.44063 1.33631 1.00975 1.53177 1.21465 0.89011 0.98365 0.89795 1.23312 0.99013 0.85058 0.96562 1.87810 1.41025 1.32193 1.69376 1.22590 0.87754 0.93199 0.94798 0.92493 1.22209 0.98972 0.89885 0.88178 1.86581 1.93586 1.22878 1.34180 1.21454 0.98667 0.87379 0.93061 0.93491 0.95403 0.88772 0.90140 0.94203 0.92512 0.93060 0.78342 0.95507 0.91906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.44 11.14 55.49 0.62 -25.82 15 2 C 0.00 0.06 4.95 -17.43 -0.09 -0.03 15 3 Si 0.91 21.73 29.59 -169.99 -5.03 16.70 15 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 15 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 15 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 7 C -0.26 -7.15 9.65 -15.06 -0.15 -7.30 15 8 H 0.07 1.86 7.88 -52.49 -0.41 1.45 15 9 N -0.59 -15.57 3.05 -171.83 -0.52 -16.09 15 10 C 0.14 3.50 5.44 -3.54 -0.02 3.48 15 11 C 0.04 0.83 6.98 37.31 0.26 1.09 15 12 O -0.38 -8.43 10.35 -39.87 -0.41 -8.84 15 13 C 0.08 1.52 3.06 -26.58 -0.08 1.44 15 14 H 0.06 1.19 8.14 -51.93 -0.42 0.77 15 15 C 0.09 1.33 6.71 37.16 0.25 1.58 15 16 O -0.57 -8.67 13.63 -39.87 -0.54 -9.21 15 17 C 0.12 2.66 6.02 -3.53 -0.02 2.64 15 18 H 0.26 7.17 8.31 -40.82 -0.34 6.83 15 19 H 0.03 0.74 8.14 -51.93 -0.42 0.32 15 20 H 0.09 2.55 6.14 -51.93 -0.32 2.23 15 21 H 0.08 1.52 8.14 -51.93 -0.42 1.09 15 22 H 0.04 0.85 8.14 -51.93 -0.42 0.43 15 23 H 0.06 0.73 8.14 -51.93 -0.42 0.31 15 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 15 25 H 0.37 3.47 9.12 45.56 0.42 3.88 15 26 H 0.03 0.59 8.14 -51.93 -0.42 0.17 15 27 H 0.06 1.28 7.96 -51.93 -0.41 0.87 15 LS Contribution 228.30 15.07 3.44 3.44 Total: -1.00 -32.25 228.30 -5.12 -37.36 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -2.82 Total: -0.44 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: 0.16 Total: 2.90 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: 0.09 Total: -41.91 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.96 Total: -18.05 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -32.25 -5.12 -37.36 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082693876.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.645 kcal (2) G-P(sol) polarization free energy of solvation -32.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds