Wall clock time and date at job start Mon Mar 30 2020 02:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00361 * 2 1 4 4 H 1.48498 * 109.47035 * 270.00086 * 3 2 1 5 5 H 1.48500 * 109.46758 * 29.99732 * 3 2 1 6 6 H 1.48497 * 109.47204 * 149.99874 * 3 2 1 7 7 C 1.38813 * 119.99668 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00200 * 196.91837 * 7 2 1 9 9 N 1.36943 * 120.00188 * 16.92540 * 7 2 1 10 10 C 1.47151 * 120.98101 * 26.20659 * 9 7 2 11 11 C 1.53292 * 108.38514 * 129.48814 * 10 9 7 12 12 O 1.42965 * 109.26438 * 52.27652 * 11 10 9 13 13 C 1.42956 * 114.16922 * 297.50532 * 12 11 10 14 14 H 1.09003 * 109.51019 * 302.54431 * 13 12 11 15 15 C 1.53001 * 109.51272 * 182.44493 * 13 12 11 16 16 O 1.42904 * 109.47086 * 65.09897 * 15 13 12 17 17 C 1.47151 * 120.98164 * 206.23343 * 9 7 2 18 18 H 0.97008 * 120.00141 * 359.97438 * 1 2 3 19 19 H 1.08998 * 109.68116 * 249.21632 * 10 9 7 20 20 H 1.08999 * 109.68059 * 9.76721 * 10 9 7 21 21 H 1.09002 * 109.51788 * 172.22404 * 11 10 9 22 22 H 1.08997 * 109.51544 * 292.33030 * 11 10 9 23 23 H 1.08996 * 109.47497 * 185.10076 * 15 13 12 24 24 H 1.08999 * 109.46786 * 305.09982 * 15 13 12 25 25 H 0.96697 * 113.99591 * 180.02562 * 16 15 13 26 26 H 1.09003 * 109.68092 * 110.78656 * 17 9 7 27 27 H 1.09005 * 109.71178 * 350.25150 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0101 -1.2022 0.0005 8 1 3.0551 -1.2224 0.2727 9 7 1.3699 -2.3626 -0.3442 10 6 0.1972 -2.3455 -1.2329 11 6 0.4241 -3.3677 -2.3525 12 8 0.7653 -4.6306 -1.7761 13 6 1.9810 -4.6215 -1.0240 14 1 2.8006 -4.2886 -1.6609 15 6 2.2742 -6.0321 -0.5093 16 8 2.5239 -6.9008 -1.6162 17 6 1.8339 -3.6634 0.1636 18 1 -0.4851 0.8401 0.0004 19 1 -0.6958 -2.6122 -0.6677 20 1 0.0768 -1.3510 -1.6627 21 1 -0.4872 -3.4707 -2.9417 22 1 1.2368 -3.0294 -2.9952 23 1 3.1506 -6.0078 0.1383 24 1 1.4162 -6.3989 0.0541 25 1 2.7172 -7.8139 -1.3637 26 1 1.1057 -4.0629 0.8695 27 1 2.7972 -3.5422 0.6591 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082693876.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:18 Heat of formation + Delta-G solvation = -97.437163 kcal Electronic energy + Delta-G solvation = -12032.015156 eV Core-core repulsion = 9789.689041 eV Total energy + Delta-G solvation = -2242.326115 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 187.100 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.19363 -37.52808 -36.25546 -33.45143 -32.48218 -29.23831 -26.94090 -24.97528 -23.26617 -21.42814 -18.89892 -18.22612 -17.49812 -16.98943 -16.16385 -15.93865 -15.45684 -15.04551 -14.84041 -14.47110 -13.82598 -13.15007 -12.92402 -12.62378 -12.48398 -12.18796 -12.03602 -11.80954 -11.34813 -10.94302 -10.78869 -10.56575 -8.78906 -7.93386 -5.41552 1.46093 1.47899 1.56971 2.45333 2.85698 3.18665 3.26821 3.62280 4.15067 4.18559 4.34778 4.41802 4.54365 4.59327 4.69115 4.77269 4.86108 5.05665 5.21761 5.50483 5.57319 6.25290 6.33468 6.98050 7.03322 7.71009 8.25514 9.13052 Molecular weight = 187.10amu Principal moments of inertia in cm(-1) A = 0.070627 B = 0.011090 C = 0.010270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.356249 B = 2524.183471 C = 2725.752999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.050 4.050 3 Si 0.975 3.025 4 H -0.284 1.284 5 H -0.293 1.293 6 H -0.266 1.266 7 C -0.272 4.272 8 H 0.074 0.926 9 N -0.616 5.616 10 C 0.145 3.855 11 C 0.050 3.950 12 O -0.393 6.393 13 C 0.075 3.925 14 H 0.047 0.953 15 C 0.094 3.906 16 O -0.588 6.588 17 C 0.119 3.881 18 H 0.253 0.747 19 H 0.004 0.996 20 H 0.068 0.932 21 H 0.107 0.893 22 H 0.040 0.960 23 H 0.088 0.912 24 H 0.059 0.941 25 H 0.398 0.602 26 H 0.025 0.975 27 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.422 -9.175 -1.370 10.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.245 4.245 3 Si 0.802 3.198 4 H -0.210 1.210 5 H -0.220 1.220 6 H -0.191 1.191 7 C -0.401 4.401 8 H 0.091 0.909 9 N -0.341 5.341 10 C 0.020 3.980 11 C -0.028 4.028 12 O -0.312 6.312 13 C 0.016 3.984 14 H 0.065 0.935 15 C 0.016 3.984 16 O -0.396 6.396 17 C -0.007 4.007 18 H 0.062 0.938 19 H 0.022 0.978 20 H 0.087 0.913 21 H 0.125 0.875 22 H 0.059 0.941 23 H 0.106 0.894 24 H 0.077 0.923 25 H 0.248 0.752 26 H 0.043 0.957 27 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.116 -8.662 -1.697 9.739 hybrid contribution 0.242 0.836 0.451 0.981 sum 4.358 -7.825 -1.246 9.043 Atomic orbital electron populations 1.70193 1.06821 1.26196 1.54989 1.25869 0.96147 1.01744 1.00769 0.85154 0.78055 0.78866 0.77676 1.21035 1.21965 1.19058 1.19596 0.93130 0.85606 1.41770 0.90856 1.44359 1.33716 1.02143 1.53850 1.21291 0.88155 0.98113 0.90479 1.23175 1.00327 0.84115 0.95193 1.87814 1.42006 1.31870 1.69555 1.22670 0.86626 0.95761 0.93360 0.93537 1.22089 1.00710 0.87412 0.88166 1.86494 1.93722 1.24891 1.34500 1.21602 0.99006 0.86059 0.94026 0.93825 0.97831 0.91338 0.87466 0.94132 0.89374 0.92280 0.75193 0.95729 0.90548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.80 11.14 21.65 0.24 -55.56 15 2 C -0.05 -2.80 4.95 84.86 0.42 -2.38 15 3 Si 0.98 44.70 29.59 68.60 2.03 46.73 15 4 H -0.28 -12.79 7.11 99.48 0.71 -12.08 15 5 H -0.29 -13.47 7.11 99.48 0.71 -12.77 15 6 H -0.27 -11.54 7.11 99.48 0.71 -10.84 15 7 C -0.27 -15.16 9.65 84.03 0.81 -14.35 15 8 H 0.07 3.93 7.88 -2.91 -0.02 3.90 15 9 N -0.62 -32.33 3.05 -697.54 -2.13 -34.46 15 10 C 0.15 7.41 5.44 86.35 0.47 7.88 15 11 C 0.05 2.10 6.98 72.08 0.50 2.60 15 12 O -0.39 -16.64 10.35 -144.55 -1.50 -18.14 15 13 C 0.08 2.87 3.06 30.69 0.09 2.96 15 14 H 0.05 1.87 8.14 -2.39 -0.02 1.85 15 15 C 0.09 2.65 6.71 71.98 0.48 3.13 15 16 O -0.59 -16.06 13.63 -144.55 -1.97 -18.03 15 17 C 0.12 5.09 6.02 86.35 0.52 5.61 15 18 H 0.25 14.48 8.31 -92.70 -0.77 13.71 15 19 H 0.00 0.20 8.14 -2.39 -0.02 0.18 15 20 H 0.07 3.82 6.14 -2.39 -0.01 3.80 15 21 H 0.11 3.89 8.14 -2.39 -0.02 3.87 15 22 H 0.04 1.70 8.14 -2.39 -0.02 1.68 15 23 H 0.09 1.93 8.14 -2.39 -0.02 1.91 15 24 H 0.06 1.57 8.14 -2.39 -0.02 1.55 15 25 H 0.40 6.00 9.12 -74.06 -0.68 5.33 15 26 H 0.02 1.07 8.14 -2.39 -0.02 1.05 15 27 H 0.08 3.00 7.96 -2.38 -0.02 2.98 15 Total: -1.00 -68.32 228.30 0.46 -67.86 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: 0.48 Total: 6.14 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: 3.30 Total: 5.47 kcal Atomic # 7 Polarization: -88.13 SS G_CDS: -1.89 Total: -90.02 kcal Atomic # 8 Polarization: -32.70 SS G_CDS: -3.47 Total: -36.17 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -68.32 0.46 -67.86 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082693876.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.582 kcal (2) G-P(sol) polarization free energy of solvation -68.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds