Wall clock time and date at job start Mon Mar 30 2020 02:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86792 * 120.00082 * 2 1 4 4 H 1.48498 * 109.46990 * 271.86985 * 3 2 1 5 5 H 1.48498 * 109.47735 * 31.87262 * 3 2 1 6 6 H 1.48501 * 109.47207 * 151.87518 * 3 2 1 7 7 C 1.38819 * 119.99534 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00254 * 339.99655 * 7 2 1 9 9 N 1.36936 * 119.99789 * 159.99969 * 7 2 1 10 10 C 1.47153 * 120.98079 * 333.74615 * 9 7 2 11 11 C 1.53301 * 108.38276 * 230.55631 * 10 9 7 12 12 O 1.42965 * 109.21928 * 307.69657 * 11 10 9 13 13 C 1.42965 * 114.16823 * 62.57991 * 12 11 10 14 14 H 1.09003 * 109.51067 * 57.39369 * 13 12 11 15 15 C 1.52996 * 109.51278 * 177.49095 * 13 12 11 16 16 O 1.42898 * 109.47374 * 295.00030 * 15 13 12 17 17 C 1.47152 * 120.98081 * 153.76217 * 9 7 2 18 18 H 0.97000 * 119.99481 * 0.02562 * 1 2 3 19 19 H 1.09001 * 109.68523 * 110.83348 * 10 9 7 20 20 H 1.09001 * 109.71009 * 350.29264 * 10 9 7 21 21 H 1.08999 * 109.51242 * 187.77320 * 11 10 9 22 22 H 1.09002 * 109.55231 * 67.64405 * 11 10 9 23 23 H 1.09000 * 109.47290 * 175.00308 * 15 13 12 24 24 H 1.08998 * 109.47178 * 55.00199 * 15 13 12 25 25 H 0.96704 * 114.00073 * 179.97438 * 16 15 13 26 26 H 1.08997 * 109.68117 * 9.72402 * 17 9 7 27 27 H 1.08995 * 109.68235 * 249.16332 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4582 2.0691 -1.3993 5 1 1.4682 2.6409 0.7392 6 1 3.5671 1.4290 0.6600 7 6 2.0102 -1.2023 0.0005 8 1 1.5191 -2.1091 0.3209 9 7 3.3177 -1.2383 -0.4051 10 6 3.8461 -0.2395 -1.3478 11 6 4.5642 -0.9785 -2.4828 12 8 5.5140 -1.8895 -1.9244 13 6 4.9347 -2.9167 -1.1163 14 1 4.2079 -3.4766 -1.7049 15 6 6.0333 -3.8625 -0.6270 16 8 6.6100 -4.5413 -1.7444 17 6 4.2356 -2.2770 0.0886 18 1 -0.4849 0.8401 -0.0004 19 1 4.5495 0.4151 -0.8331 20 1 3.0258 0.3512 -1.7556 21 1 5.0802 -0.2579 -3.1172 22 1 3.8359 -1.5306 -3.0768 23 1 5.6050 -4.5924 0.0599 24 1 6.8044 -3.2887 -0.1129 25 1 7.3158 -5.1587 -1.5080 26 1 3.6729 -3.0360 0.6321 27 1 4.9782 -1.8276 0.7478 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082693877.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:20 Heat of formation + Delta-G solvation = -65.730517 kcal Electronic energy + Delta-G solvation = -12097.106503 eV Core-core repulsion = 9856.155291 eV Total energy + Delta-G solvation = -2240.951212 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 187.100 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.79116 -36.39944 -34.55879 -31.75420 -31.25808 -27.66578 -25.58557 -23.08780 -21.85819 -20.02253 -17.15723 -16.94214 -16.17027 -15.49498 -14.75263 -14.18243 -14.08063 -13.65439 -13.43170 -12.79961 -12.25769 -11.84252 -11.56117 -11.17960 -10.66622 -10.39577 -10.28035 -9.95924 -9.70049 -9.53318 -9.33417 -8.57327 -7.03622 -5.99890 -3.37151 3.28141 3.45277 3.48817 4.20087 4.32118 4.48437 4.91687 5.29069 5.38928 5.45267 5.66327 5.70606 5.86694 5.93397 6.09610 6.16957 6.23362 6.46864 6.51713 6.72862 7.70458 7.77297 7.85009 8.25632 8.83601 9.64381 10.00923 11.15749 Molecular weight = 187.10amu Principal moments of inertia in cm(-1) A = 0.067350 B = 0.012542 C = 0.011528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.637444 B = 2231.917028 C = 2428.269187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.024 3.976 3 Si 0.885 3.115 4 H -0.287 1.287 5 H -0.302 1.302 6 H -0.271 1.271 7 C -0.263 4.263 8 H 0.088 0.912 9 N -0.608 5.608 10 C 0.088 3.912 11 C 0.049 3.951 12 O -0.381 6.381 13 C 0.074 3.926 14 H 0.063 0.937 15 C 0.086 3.914 16 O -0.568 6.568 17 C 0.124 3.876 18 H 0.264 0.736 19 H 0.035 0.965 20 H 0.081 0.919 21 H 0.085 0.915 22 H 0.051 0.949 23 H 0.059 0.941 24 H 0.051 0.949 25 H 0.372 0.628 26 H 0.073 0.927 27 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.967 -4.778 -1.512 12.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.175 4.175 3 Si 0.716 3.284 4 H -0.215 1.215 5 H -0.230 1.230 6 H -0.196 1.196 7 C -0.391 4.391 8 H 0.106 0.894 9 N -0.333 5.333 10 C -0.037 4.037 11 C -0.029 4.029 12 O -0.300 6.300 13 C 0.014 3.986 14 H 0.081 0.919 15 C 0.008 3.992 16 O -0.372 6.372 17 C -0.002 4.002 18 H 0.074 0.926 19 H 0.052 0.948 20 H 0.099 0.901 21 H 0.103 0.897 22 H 0.069 0.931 23 H 0.078 0.922 24 H 0.070 0.930 25 H 0.218 0.782 26 H 0.091 0.909 27 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 10.531 -4.304 -1.836 11.524 hybrid contribution 0.472 0.714 0.405 0.947 sum 11.004 -3.590 -1.431 11.663 Atomic orbital electron populations 1.69829 1.05663 1.26676 1.52818 1.25240 0.95261 0.97645 0.99379 0.86941 0.79904 0.84419 0.77173 1.21486 1.22970 1.19577 1.18925 0.84157 0.94993 1.41050 0.89407 1.44337 1.08416 1.31143 1.49359 1.22057 0.97701 0.92685 0.91274 1.23048 0.92075 0.92245 0.95577 1.87837 1.33593 1.41475 1.67090 1.22633 0.93832 0.88177 0.93914 0.91890 1.22183 0.95417 0.93584 0.88027 1.86575 1.55770 1.60572 1.34276 1.21481 0.92973 0.92491 0.93251 0.92637 0.94763 0.90067 0.89653 0.93086 0.92244 0.93033 0.78173 0.90882 0.94990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.88 13.97 55.49 0.78 -27.11 15 2 C 0.02 0.70 5.26 -17.43 -0.09 0.60 15 3 Si 0.89 22.58 24.29 -169.99 -4.13 18.46 15 4 H -0.29 -7.01 6.58 56.52 0.37 -6.64 15 5 H -0.30 -7.77 7.11 56.52 0.40 -7.37 15 6 H -0.27 -6.85 6.55 56.52 0.37 -6.48 15 7 C -0.26 -7.48 10.10 -15.06 -0.15 -7.63 15 8 H 0.09 2.62 8.06 -52.49 -0.42 2.20 15 9 N -0.61 -15.02 2.83 -171.83 -0.49 -15.51 15 10 C 0.09 2.02 4.38 -3.53 -0.02 2.00 15 11 C 0.05 0.96 6.99 37.31 0.26 1.22 15 12 O -0.38 -7.72 10.35 -39.97 -0.41 -8.14 15 13 C 0.07 1.38 3.06 -26.58 -0.08 1.30 15 14 H 0.06 1.25 8.14 -51.93 -0.42 0.83 15 15 C 0.09 1.24 6.71 37.16 0.25 1.49 15 16 O -0.57 -8.14 13.63 -39.97 -0.54 -8.69 15 17 C 0.12 2.54 6.02 -3.53 -0.02 2.52 15 18 H 0.26 7.67 8.31 -40.82 -0.34 7.34 15 19 H 0.03 0.79 6.87 -51.93 -0.36 0.43 15 20 H 0.08 1.96 4.61 -51.93 -0.24 1.72 15 21 H 0.09 1.44 8.14 -51.93 -0.42 1.01 15 22 H 0.05 1.01 8.14 -51.93 -0.42 0.59 15 23 H 0.06 0.71 8.14 -51.93 -0.42 0.29 15 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 15 25 H 0.37 3.19 9.12 45.56 0.42 3.60 15 26 H 0.07 1.41 7.96 -51.93 -0.41 1.00 15 27 H 0.03 0.64 8.14 -51.93 -0.42 0.21 15 LS Contribution 221.59 15.07 3.34 3.34 Total: -1.00 -33.07 221.59 -4.06 -37.13 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: -2.75 Total: -1.00 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: 0.15 Total: 1.51 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: 0.29 Total: -42.61 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -0.96 Total: -16.83 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.13 Total: 18.46 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -33.07 -4.06 -37.13 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082693877.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.603 kcal (2) G-P(sol) polarization free energy of solvation -33.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds