Wall clock time and date at job start Mon Mar 30 2020 02:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00544 * 2 1 4 4 H 1.48501 * 109.47444 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47008 * 299.99744 * 3 2 1 6 6 H 1.48497 * 109.47267 * 59.99779 * 3 2 1 7 7 C 1.37884 * 119.99448 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99747 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00100 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46900 * 180.02562 * 9 7 2 11 11 C 1.48536 * 110.99521 * 170.00139 * 10 9 7 12 12 C 1.54942 * 103.22418 * 159.72350 * 11 10 9 13 13 H 1.08990 * 110.72581 * 80.94382 * 12 11 10 14 14 O 1.42900 * 110.72116 * 204.22764 * 12 11 10 15 15 C 1.54591 * 102.91948 * 322.58184 * 12 11 10 16 16 H 1.09003 * 110.30970 * 140.87879 * 15 12 11 17 17 O 1.42900 * 110.39788 * 262.99865 * 15 12 11 18 18 C 1.47900 * 110.99996 * 287.39672 * 10 9 7 19 19 H 0.97001 * 119.99382 * 0.02562 * 1 2 3 20 20 H 1.08996 * 109.47117 * 60.00138 * 9 7 2 21 21 H 1.08996 * 109.46954 * 300.00186 * 9 7 2 22 22 H 1.09004 * 110.66813 * 278.15215 * 11 10 9 23 23 H 1.09000 * 110.66721 * 41.28713 * 11 10 9 24 24 H 0.96701 * 113.99812 * 298.54451 * 14 12 11 25 25 H 0.96703 * 114.00490 * 177.21884 * 17 15 12 26 26 H 1.08998 * 109.91806 * 333.51013 * 18 10 9 27 27 H 1.08995 * 109.91750 * 94.61145 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8906 2.3964 1.2124 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0017 10 7 2.2054 -3.6158 0.0027 11 6 1.5131 -4.9075 0.2446 12 6 2.5168 -5.9549 -0.2998 13 1 3.2977 -6.1581 0.4329 14 8 1.8411 -7.1591 -0.6677 15 6 3.1048 -5.2549 -1.5463 16 1 4.1726 -5.4587 -1.6263 17 8 2.4280 -5.6896 -2.7274 18 6 2.8636 -3.7516 -1.3148 19 1 -0.4849 0.8401 -0.0004 20 1 0.6239 -2.5575 -0.8880 21 1 0.6245 -2.5563 0.8919 22 1 1.3405 -5.0579 1.3104 23 1 0.5746 -4.9505 -0.3080 24 1 1.3885 -7.5962 0.0666 25 1 2.7268 -5.2513 -3.5360 26 1 2.2156 -3.3548 -2.0963 27 1 3.8130 -3.2162 -1.3125 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086331918.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:54 Heat of formation + Delta-G solvation = -120.802862 kcal Electronic energy + Delta-G solvation = -11807.800249 eV Core-core repulsion = 9564.460921 eV Total energy + Delta-G solvation = -2243.339328 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 187.100 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.44478 -36.99181 -36.81889 -34.77447 -31.33431 -29.17765 -27.92461 -24.54763 -22.16416 -21.66907 -19.01267 -18.50905 -17.50265 -17.00197 -16.43158 -15.57453 -15.48801 -15.06912 -14.49837 -14.21830 -13.71248 -13.38717 -13.07723 -12.67129 -12.60598 -12.43413 -12.08197 -11.58149 -11.43248 -11.08125 -10.80486 -10.64763 -9.29138 -8.25106 -6.36805 1.40402 1.41091 1.55205 2.37822 2.92531 3.07598 3.29675 3.51123 3.72672 3.76237 4.18959 4.28856 4.50095 4.70561 4.81422 4.86087 5.02893 5.05680 5.14120 5.58633 5.92173 6.11151 6.38045 6.76970 6.78866 6.96167 7.33792 8.86809 Molecular weight = 187.10amu Principal moments of inertia in cm(-1) A = 0.072408 B = 0.009593 C = 0.009146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.604207 B = 2918.032628 C = 3060.554772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.001 4.001 3 Si 0.976 3.024 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.526 4.526 8 H 0.066 0.934 9 C 0.200 3.800 10 N -0.515 5.515 11 C -0.001 4.001 12 C 0.115 3.885 13 H 0.106 0.894 14 O -0.561 6.561 15 C 0.102 3.898 16 H 0.098 0.902 17 O -0.567 6.567 18 C 0.016 3.984 19 H 0.266 0.734 20 H -0.038 1.038 21 H 0.004 0.996 22 H 0.091 0.909 23 H 0.025 0.975 24 H 0.392 0.608 25 H 0.389 0.611 26 H 0.031 0.969 27 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.698 -9.319 -1.450 11.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.199 4.199 3 Si 0.800 3.200 4 H -0.184 1.184 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.564 4.564 8 H 0.084 0.916 9 C 0.073 3.927 10 N -0.241 5.241 11 C -0.130 4.130 12 C 0.055 3.945 13 H 0.124 0.876 14 O -0.367 6.367 15 C 0.042 3.958 16 H 0.115 0.885 17 O -0.373 6.373 18 C -0.112 4.112 19 H 0.074 0.926 20 H -0.021 1.021 21 H 0.022 0.978 22 H 0.109 0.891 23 H 0.043 0.957 24 H 0.242 0.758 25 H 0.239 0.761 26 H 0.049 0.951 27 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.853 -9.334 -1.204 11.642 hybrid contribution -0.792 1.231 -0.419 1.523 sum 6.061 -8.103 -1.624 10.248 Atomic orbital electron populations 1.70106 1.07950 1.28059 1.51614 1.26011 0.95792 1.03560 0.94543 0.85229 0.78965 0.78002 0.77778 1.18418 1.20373 1.20264 1.21471 0.93762 0.90832 1.50366 0.91615 1.19570 0.90151 0.89479 0.93480 1.64767 1.28449 1.02520 1.28365 1.23995 0.96434 0.90982 1.01551 1.22834 0.93584 0.83459 0.94630 0.87645 1.86577 1.72083 1.37806 1.40280 1.22853 0.96753 0.90782 0.85396 0.88463 1.86593 1.65953 1.67417 1.17385 1.23579 1.00142 0.96491 0.91032 0.92553 1.02076 0.97813 0.89111 0.95673 0.75816 0.76141 0.95056 0.89576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.24 13.29 21.45 0.28 -56.95 15 2 C 0.00 -0.07 5.46 84.66 0.46 0.40 15 3 Si 0.98 44.24 29.54 68.60 2.03 46.26 15 4 H -0.26 -11.22 7.11 99.48 0.71 -10.51 15 5 H -0.28 -12.24 7.11 99.48 0.71 -11.54 15 6 H -0.28 -12.22 7.11 99.48 0.71 -11.51 15 7 C -0.53 -30.27 8.90 25.60 0.23 -30.04 15 8 H 0.07 3.67 7.81 -2.91 -0.02 3.65 15 9 C 0.20 11.03 4.55 85.56 0.39 11.42 15 10 N -0.52 -22.82 5.24 -887.56 -4.65 -27.46 15 11 C 0.00 -0.03 6.24 86.65 0.54 0.51 15 12 C 0.11 3.41 4.39 31.80 0.14 3.55 15 13 H 0.11 2.57 8.14 -2.39 -0.02 2.55 15 14 O -0.56 -16.03 12.71 -129.73 -1.65 -17.68 15 15 C 0.10 3.12 4.31 31.47 0.14 3.26 15 16 H 0.10 2.38 8.14 -2.39 -0.02 2.36 15 17 O -0.57 -17.98 12.57 -129.73 -1.63 -19.61 15 18 C 0.02 0.62 6.06 86.45 0.52 1.15 15 19 H 0.27 15.13 8.31 -92.71 -0.77 14.36 15 20 H -0.04 -2.33 7.74 -2.39 -0.02 -2.35 15 21 H 0.00 0.22 8.08 -2.39 -0.02 0.20 15 22 H 0.09 3.02 8.14 -2.38 -0.02 3.00 15 23 H 0.02 1.04 8.02 -2.39 -0.02 1.02 15 24 H 0.39 7.29 9.11 -74.06 -0.67 6.61 15 25 H 0.39 8.81 9.11 -74.06 -0.67 8.13 15 26 H 0.03 1.34 7.34 -2.39 -0.02 1.32 15 27 H 0.09 3.13 8.14 -2.39 -0.02 3.11 15 Total: -1.00 -71.42 232.66 -3.37 -74.79 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -0.17 Total: 10.41 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: 2.42 Total: -9.77 kcal Atomic # 7 Polarization: -80.05 SS G_CDS: -4.36 Total: -84.41 kcal Atomic # 8 Polarization: -34.01 SS G_CDS: -3.28 Total: -37.29 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Total: -71.42 -3.37 -74.79 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086331918.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.011 kcal (2) G-P(sol) polarization free energy of solvation -71.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds