Wall clock time and date at job start Mon Mar 30 2020 01:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31092 * 1 3 3 Si 1.86806 * 120.00012 * 2 1 4 4 H 1.48499 * 109.47015 * 239.99898 * 3 2 1 5 5 H 1.48497 * 109.46744 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47211 * 119.99950 * 3 2 1 7 7 C 1.39787 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99715 * 179.97438 * 7 2 1 9 9 C 1.39699 * 120.00111 * 0.02562 * 7 2 1 10 10 C 1.40185 * 125.97340 * 359.97438 * 9 7 2 11 11 C 1.37791 * 107.74195 * 180.02562 * 10 9 7 12 12 C 1.40107 * 107.81622 * 0.02562 * 11 10 9 13 13 C 1.40238 * 131.94405 * 179.97438 * 12 11 10 14 14 C 1.36637 * 119.40148 * 179.97438 * 13 12 11 15 15 C 1.40250 * 119.63662 * 0.02562 * 14 13 12 16 16 C 1.35199 * 120.32194 * 0.02562 * 15 14 13 17 17 N 1.36771 * 120.65935 * 359.96988 * 16 15 14 18 18 H 0.96999 * 119.99825 * 0.02562 * 1 2 3 19 19 H 1.08001 * 126.12480 * 359.76022 * 10 9 7 20 20 H 1.07998 * 126.08887 * 179.97438 * 11 10 9 21 21 H 1.07997 * 120.29456 * 0.02562 * 13 12 11 22 22 H 1.07995 * 120.18009 * 180.02562 * 14 13 12 23 23 H 1.08000 * 119.83785 * 179.97438 * 15 14 13 24 24 H 1.08001 * 119.66655 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3109 0.0000 0.0000 3 14 2.2450 1.6178 0.0000 4 1 3.0987 1.6964 -1.2125 5 1 1.2799 2.7464 -0.0006 6 1 3.0987 1.6965 1.2125 7 6 2.0099 -1.2106 0.0005 8 1 3.0899 -1.2105 0.0001 9 6 1.3114 -2.4204 0.0005 10 6 -0.0829 -2.5664 0.0005 11 6 -0.3639 -3.9153 0.0011 12 6 0.8546 -4.6070 0.0021 13 6 1.1548 -5.9769 0.0034 14 6 2.4611 -6.3773 0.0036 15 6 3.4815 -5.4150 0.0030 16 6 3.1773 -4.0977 0.0028 17 7 1.8741 -3.6828 0.0025 18 1 -0.4850 0.8401 -0.0004 19 1 -0.8069 -1.7650 0.0042 20 1 -1.3480 -4.3601 0.0017 21 1 0.3605 -6.7086 0.0035 22 1 2.7066 -7.4290 0.0042 23 1 4.5151 -5.7279 0.0036 24 1 3.9715 -3.3657 0.0027 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000148402398.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:57 Heat of formation + Delta-G solvation = 61.573552 kcal Electronic energy + Delta-G solvation = -10702.795248 eV Core-core repulsion = 8774.673275 eV Total energy + Delta-G solvation = -1928.121974 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 187.069 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.26725 -35.37837 -33.28101 -31.62868 -28.43068 -27.68083 -24.57185 -21.95087 -20.37522 -19.56026 -17.47022 -15.54386 -15.24618 -14.58223 -14.34776 -13.70861 -13.24092 -12.86551 -11.81538 -11.67571 -11.34000 -11.25697 -10.64902 -10.47966 -10.20078 -10.18424 -9.81173 -9.26119 -9.12013 -7.05875 -6.64712 -6.44264 -4.08454 2.08329 2.62256 3.05030 3.07590 3.08060 3.86927 4.27588 4.38222 4.80963 5.34961 5.66246 5.83776 6.08055 6.16769 6.43769 6.76145 7.00827 7.07544 7.20461 7.30074 7.42106 7.65856 7.78633 8.06610 8.25356 8.68022 8.75291 8.91445 9.19886 10.24020 Molecular weight = 187.07amu Principal moments of inertia in cm(-1) A = 0.063406 B = 0.012474 C = 0.010462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.490364 B = 2244.166857 C = 2675.816096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.070 3.930 3 Si 0.928 3.072 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.441 4.441 8 H 0.072 0.928 9 C 0.193 3.807 10 C -0.224 4.224 11 C -0.174 4.174 12 C -0.082 4.082 13 C -0.052 4.052 14 C -0.210 4.210 15 C -0.178 4.178 16 C 0.064 3.936 17 N -0.388 5.388 18 H 0.279 0.721 19 H 0.169 0.831 20 H 0.114 0.886 21 H 0.113 0.887 22 H 0.105 0.895 23 H 0.118 0.882 24 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.813 -2.448 0.006 3.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.146 4.146 3 Si 0.752 3.248 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.476 4.476 8 H 0.090 0.910 9 C 0.083 3.917 10 C -0.245 4.245 11 C -0.199 4.199 12 C -0.179 4.179 13 C -0.071 4.071 14 C -0.230 4.230 15 C -0.201 4.201 16 C -0.056 4.056 17 N -0.061 5.061 18 H 0.090 0.910 19 H 0.186 0.814 20 H 0.132 0.868 21 H 0.131 0.869 22 H 0.123 0.877 23 H 0.136 0.864 24 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.816 -2.314 0.007 3.644 hybrid contribution 0.503 0.596 0.000 0.780 sum 3.318 -1.717 0.007 3.736 Atomic orbital electron populations 1.69761 1.07173 1.28556 1.37499 1.25643 0.94979 1.00845 0.93130 0.86047 0.79535 0.79528 0.79662 1.19139 1.20155 1.19133 1.18367 0.94150 0.88812 1.46228 0.90964 1.18361 0.91594 0.81225 1.00480 1.21982 0.94490 0.95005 1.13011 1.20912 0.93959 0.94669 1.10396 1.18325 0.88426 0.88737 1.22444 1.20247 0.96033 0.92871 0.97959 1.20309 0.92606 0.97849 1.12206 1.20162 0.98840 0.91623 1.09439 1.21244 0.85896 0.95923 1.02555 1.41567 1.03596 1.07398 1.53530 0.90998 0.81446 0.86826 0.86876 0.87689 0.86415 0.84577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.58 10.20 55.54 0.57 -20.02 14 2 C 0.07 1.76 5.49 -17.29 -0.09 1.67 14 3 Si 0.93 18.72 29.56 -169.99 -5.03 13.69 14 4 H -0.27 -5.32 7.11 56.52 0.40 -4.92 14 5 H -0.28 -5.41 7.11 56.52 0.40 -5.01 14 6 H -0.27 -5.32 7.11 56.52 0.40 -4.91 14 7 C -0.44 -11.78 9.17 -38.46 -0.35 -12.13 14 8 H 0.07 1.82 7.57 -52.49 -0.40 1.42 14 9 C 0.19 5.34 6.73 -83.71 -0.56 4.78 14 10 C -0.22 -6.11 9.70 -39.01 -0.38 -6.49 14 11 C -0.17 -4.36 10.91 -39.04 -0.43 -4.79 14 12 C -0.08 -2.05 6.73 -83.82 -0.56 -2.61 14 13 C -0.05 -1.11 10.10 -39.41 -0.40 -1.51 14 14 C -0.21 -4.14 10.09 -39.40 -0.40 -4.54 14 15 C -0.18 -3.52 9.98 -39.91 -0.40 -3.92 14 16 C 0.06 1.43 10.75 -16.43 -0.18 1.25 14 17 N -0.39 -10.03 2.98 -58.15 -0.17 -10.21 14 18 H 0.28 6.50 8.30 -40.82 -0.34 6.16 14 19 H 0.17 4.64 5.62 -52.49 -0.29 4.35 14 20 H 0.11 2.50 8.06 -52.49 -0.42 2.07 14 21 H 0.11 2.06 8.06 -52.49 -0.42 1.64 14 22 H 0.10 1.74 8.06 -52.49 -0.42 1.31 14 23 H 0.12 1.90 8.06 -52.49 -0.42 1.47 14 24 H 0.14 2.73 7.79 -52.49 -0.41 2.32 14 LS Contribution 215.23 15.07 3.24 3.24 Total: -1.00 -28.62 215.23 -7.07 -35.68 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -1.93 Total: 5.90 kcal Atomic # 6 Polarization: -24.54 SS G_CDS: -3.75 Total: -28.29 kcal Atomic # 7 Polarization: -30.62 SS G_CDS: 0.39 Total: -30.22 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 3.24 Total: 3.24 kcal Total: -28.62 -7.07 -35.68 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148402398.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.255 kcal (2) G-P(sol) polarization free energy of solvation -28.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds