Wall clock time and date at job start Mon Mar 30 2020 02:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31584 * 1 3 3 Si 1.86801 * 120.00251 * 2 1 4 4 H 1.48496 * 109.46852 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47021 * 299.99563 * 3 2 1 6 6 H 1.48501 * 109.47039 * 59.99979 * 3 2 1 7 7 C 1.38636 * 119.99830 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00310 * 180.02562 * 7 2 1 9 9 O 1.34929 * 119.99824 * 359.72370 * 7 2 1 10 10 C 1.42905 * 116.99984 * 180.27471 * 9 7 2 11 11 C 1.52994 * 109.47164 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.50879 * 305.09115 * 11 10 9 13 13 C 1.53101 * 109.51044 * 185.00298 * 11 10 9 14 14 N 1.47012 * 109.26151 * 183.22029 * 13 11 10 15 15 C 1.47011 * 110.75406 * 58.61194 * 14 13 11 16 16 C 1.53096 * 109.26072 * 301.38456 * 15 14 13 17 17 O 1.43019 * 109.25634 * 56.84923 * 16 15 14 18 18 H 0.96995 * 119.99730 * 0.02562 * 1 2 3 19 19 H 1.08998 * 109.47334 * 300.00393 * 10 9 7 20 20 H 1.09004 * 109.46821 * 60.00647 * 10 9 7 21 21 H 1.09001 * 109.49963 * 303.15667 * 13 11 10 22 22 H 1.09003 * 109.50679 * 63.23441 * 13 11 10 23 23 H 1.00904 * 110.99720 * 182.39171 * 14 13 11 24 24 H 1.09001 * 109.50548 * 61.32014 * 15 14 13 25 25 H 1.08998 * 109.50673 * 181.44605 * 15 14 13 26 26 H 1.08998 * 109.50892 * 176.78374 * 16 15 14 27 27 H 1.09000 * 109.50418 * 296.87480 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 3.7099 1.3462 0.0006 5 1 1.8913 2.3963 -1.2126 6 1 1.8912 2.3964 1.2125 7 6 2.0090 -1.2006 0.0005 8 1 3.0890 -1.2007 0.0010 9 8 1.3343 -2.3691 0.0067 10 6 2.1125 -3.5676 0.0130 11 6 1.1805 -4.7809 0.0187 12 1 0.4901 -4.7055 0.8588 13 6 2.0090 -6.0615 0.1513 14 7 1.1157 -7.2268 0.0787 15 6 0.3733 -7.2358 -1.1902 16 6 -0.4389 -5.9435 -1.3093 17 8 0.4419 -4.8216 -1.2053 18 1 -0.4849 0.8400 -0.0004 19 1 2.7414 -3.5972 -0.8768 20 1 2.7413 -3.5879 0.9032 21 1 2.7367 -6.1096 -0.6589 22 1 2.5300 -6.0605 1.1088 23 1 1.6308 -8.0856 0.2024 24 1 1.0748 -7.3027 -2.0218 25 1 -0.3004 -8.0924 -1.2117 26 1 -0.9460 -5.9199 -2.2738 27 1 -1.1774 -5.9027 -0.5086 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168784501.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:23 Heat of formation + Delta-G solvation = -75.171327 kcal Electronic energy + Delta-G solvation = -11706.865478 eV Core-core repulsion = 9465.504882 eV Total energy + Delta-G solvation = -2241.360596 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 187.100 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.05485 -36.03446 -34.28302 -32.11070 -31.00677 -27.30685 -25.01214 -23.82552 -21.95681 -20.08680 -17.41990 -16.58114 -16.04030 -15.37618 -14.64988 -14.32010 -14.07335 -13.74900 -13.46711 -13.13470 -12.37043 -11.82307 -11.40277 -11.13824 -10.91256 -10.70896 -10.27961 -9.95886 -9.52194 -9.30747 -9.06520 -8.44846 -7.89872 -5.87396 -3.51477 3.35238 3.37719 3.42706 4.11080 4.22960 4.37905 5.03696 5.11997 5.24351 5.39630 5.44317 5.51189 5.70462 5.79831 6.00687 6.02447 6.15501 6.46271 6.60709 6.68523 6.87525 7.26671 7.53183 7.73260 8.49578 9.55044 10.24231 11.33754 Molecular weight = 187.10amu Principal moments of inertia in cm(-1) A = 0.090699 B = 0.008713 C = 0.008207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 308.640278 B = 3212.656696 C = 3410.735151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.023 3.977 3 Si 0.925 3.075 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.361 4.361 8 H 0.062 0.938 9 O -0.287 6.287 10 C 0.081 3.919 11 C 0.099 3.901 12 H 0.070 0.930 13 C 0.029 3.971 14 N -0.688 5.688 15 C 0.019 3.981 16 C 0.059 3.941 17 O -0.362 6.362 18 H 0.257 0.743 19 H 0.029 0.971 20 H 0.038 0.962 21 H 0.039 0.961 22 H 0.086 0.914 23 H 0.341 0.659 24 H 0.037 0.963 25 H 0.081 0.919 26 H 0.093 0.907 27 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.785 -12.642 -0.905 12.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.176 4.176 3 Si 0.753 3.247 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.441 4.441 8 H 0.080 0.920 9 O -0.202 6.202 10 C 0.003 3.997 11 C 0.041 3.959 12 H 0.088 0.912 13 C -0.101 4.101 14 N -0.319 5.319 15 C -0.110 4.110 16 C -0.018 4.018 17 O -0.281 6.281 18 H 0.067 0.933 19 H 0.047 0.953 20 H 0.056 0.944 21 H 0.057 0.943 22 H 0.104 0.896 23 H 0.159 0.841 24 H 0.055 0.945 25 H 0.099 0.901 26 H 0.111 0.889 27 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.966 -12.085 -0.700 12.263 hybrid contribution 1.397 0.220 -0.444 1.482 sum 3.362 -11.865 -1.144 12.385 Atomic orbital electron populations 1.70054 1.05403 1.25664 1.51837 1.24959 0.95650 0.97696 0.99257 0.85894 0.78773 0.82399 0.77676 1.19955 1.20893 1.20915 1.20864 0.90184 0.82774 1.50240 0.91983 1.85697 1.31157 1.10078 1.93225 1.22023 0.92355 0.86837 0.98503 1.22146 0.93343 0.92586 0.87813 0.91217 1.22557 0.94494 0.91314 1.01741 1.60503 1.31069 1.05392 1.34972 1.22652 0.97979 0.99872 0.90509 1.22596 0.92294 0.84849 1.02091 1.88185 1.56887 1.44693 1.38306 0.93328 0.95292 0.94412 0.94256 0.89607 0.84108 0.94479 0.90056 0.88887 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.87 13.67 55.48 0.76 -28.11 15 2 C 0.02 0.69 5.49 -17.51 -0.10 0.59 15 3 Si 0.93 22.66 29.55 -169.99 -5.02 17.64 15 4 H -0.27 -6.43 7.11 56.52 0.40 -6.02 15 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 6 H -0.28 -6.78 7.11 56.52 0.40 -6.37 15 7 C -0.36 -11.09 9.89 30.88 0.31 -10.78 15 8 H 0.06 1.78 7.77 -52.49 -0.41 1.37 15 9 O -0.29 -8.72 9.75 -21.00 -0.20 -8.93 15 10 C 0.08 1.90 5.68 37.15 0.21 2.11 15 11 C 0.10 2.01 3.09 -26.68 -0.08 1.92 15 12 H 0.07 1.49 8.14 -51.93 -0.42 1.07 15 13 C 0.03 0.43 6.05 -3.71 -0.02 0.41 15 14 N -0.69 -9.17 6.92 -113.50 -0.79 -9.96 15 15 C 0.02 0.25 6.76 -3.71 -0.03 0.23 15 16 C 0.06 0.94 7.01 37.21 0.26 1.21 15 17 O -0.36 -7.76 10.44 -39.72 -0.41 -8.17 15 18 H 0.26 7.73 8.31 -40.82 -0.34 7.39 15 19 H 0.03 0.67 8.14 -51.93 -0.42 0.24 15 20 H 0.04 0.81 8.14 -51.93 -0.42 0.39 15 21 H 0.04 0.58 8.14 -51.93 -0.42 0.16 15 22 H 0.09 1.16 8.14 -51.93 -0.42 0.74 15 23 H 0.34 3.54 8.90 -39.29 -0.35 3.19 15 24 H 0.04 0.47 8.14 -51.93 -0.42 0.05 15 25 H 0.08 0.83 8.14 -51.93 -0.42 0.41 15 26 H 0.09 1.28 8.14 -51.93 -0.42 0.86 15 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 15 LS Contribution 233.89 15.07 3.52 3.52 Total: -1.00 -35.50 233.89 -5.29 -40.79 By element: Atomic # 1 Polarization: 1.22 SS G_CDS: -3.70 Total: -2.47 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: 0.55 Total: -4.31 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: -0.03 Total: -38.07 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.62 Total: -17.10 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -35.50 -5.29 -40.79 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168784501.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.385 kcal (2) G-P(sol) polarization free energy of solvation -35.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds