Wall clock time and date at job start Mon Mar 30 2020 02:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31584 * 1 3 3 Si 1.86801 * 120.00251 * 2 1 4 4 H 1.48496 * 109.46852 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47021 * 299.99563 * 3 2 1 6 6 H 1.48501 * 109.47039 * 59.99979 * 3 2 1 7 7 C 1.38636 * 119.99830 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00310 * 180.02562 * 7 2 1 9 9 O 1.34929 * 119.99824 * 359.72370 * 7 2 1 10 10 C 1.42905 * 116.99984 * 180.27471 * 9 7 2 11 11 C 1.52994 * 109.47164 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.50879 * 305.09115 * 11 10 9 13 13 C 1.53101 * 109.51044 * 185.00298 * 11 10 9 14 14 N 1.47012 * 109.26151 * 183.22029 * 13 11 10 15 15 C 1.47011 * 110.75406 * 58.61194 * 14 13 11 16 16 C 1.53096 * 109.26072 * 301.38456 * 15 14 13 17 17 O 1.43019 * 109.25634 * 56.84923 * 16 15 14 18 18 H 0.96995 * 119.99730 * 0.02562 * 1 2 3 19 19 H 1.08998 * 109.47334 * 300.00393 * 10 9 7 20 20 H 1.09004 * 109.46821 * 60.00647 * 10 9 7 21 21 H 1.09001 * 109.49963 * 303.15667 * 13 11 10 22 22 H 1.09003 * 109.50679 * 63.23441 * 13 11 10 23 23 H 1.00904 * 110.99720 * 182.39171 * 14 13 11 24 24 H 1.09001 * 109.50548 * 61.32014 * 15 14 13 25 25 H 1.08998 * 109.50673 * 181.44605 * 15 14 13 26 26 H 1.08998 * 109.50892 * 176.78374 * 16 15 14 27 27 H 1.09000 * 109.50418 * 296.87480 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 3.7099 1.3462 0.0006 5 1 1.8913 2.3963 -1.2126 6 1 1.8912 2.3964 1.2125 7 6 2.0090 -1.2006 0.0005 8 1 3.0890 -1.2007 0.0010 9 8 1.3343 -2.3691 0.0067 10 6 2.1125 -3.5676 0.0130 11 6 1.1805 -4.7809 0.0187 12 1 0.4901 -4.7055 0.8588 13 6 2.0090 -6.0615 0.1513 14 7 1.1157 -7.2268 0.0787 15 6 0.3733 -7.2358 -1.1902 16 6 -0.4389 -5.9435 -1.3093 17 8 0.4419 -4.8216 -1.2053 18 1 -0.4849 0.8400 -0.0004 19 1 2.7414 -3.5972 -0.8768 20 1 2.7413 -3.5879 0.9032 21 1 2.7367 -6.1096 -0.6589 22 1 2.5300 -6.0605 1.1088 23 1 1.6308 -8.0856 0.2024 24 1 1.0748 -7.3027 -2.0218 25 1 -0.3004 -8.0924 -1.2117 26 1 -0.9460 -5.9199 -2.2738 27 1 -1.1774 -5.9027 -0.5086 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168784501.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:22 Heat of formation + Delta-G solvation = -104.583551 kcal Electronic energy + Delta-G solvation = -11708.140888 eV Core-core repulsion = 9465.504882 eV Total energy + Delta-G solvation = -2242.636006 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 187.100 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.45659 -38.12493 -35.57447 -34.13102 -32.73899 -28.79920 -26.87871 -25.55251 -23.48483 -21.44499 -19.62910 -17.88572 -17.57876 -17.37142 -16.01268 -15.89754 -15.52881 -15.35128 -15.02449 -14.84659 -14.21171 -13.57132 -13.02414 -12.83302 -12.40824 -12.26525 -12.02519 -11.70794 -11.45564 -11.23045 -10.67578 -10.17614 -9.54546 -8.17658 -5.88855 1.39585 1.46638 1.57412 2.32523 2.80789 3.04395 3.15735 3.56478 3.96437 4.03258 4.09294 4.25121 4.46303 4.50041 4.55166 4.61970 4.70686 4.83227 4.95224 5.02849 5.21882 5.75489 6.20296 6.29620 6.39377 7.24113 8.04813 9.08028 Molecular weight = 187.10amu Principal moments of inertia in cm(-1) A = 0.090699 B = 0.008713 C = 0.008207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 308.640278 B = 3212.656696 C = 3410.735151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.045 4.045 3 Si 1.012 2.988 4 H -0.254 1.254 5 H -0.276 1.276 6 H -0.273 1.273 7 C -0.383 4.383 8 H 0.076 0.924 9 O -0.334 6.334 10 C 0.074 3.926 11 C 0.101 3.899 12 H 0.047 0.953 13 C 0.042 3.958 14 N -0.691 5.691 15 C 0.027 3.973 16 C 0.047 3.953 17 O -0.405 6.405 18 H 0.261 0.739 19 H 0.030 0.970 20 H 0.058 0.942 21 H 0.046 0.954 22 H 0.105 0.895 23 H 0.364 0.636 24 H 0.043 0.957 25 H 0.115 0.885 26 H 0.110 0.890 27 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.129 -13.364 -0.935 14.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.238 4.238 3 Si 0.833 3.167 4 H -0.178 1.178 5 H -0.202 1.202 6 H -0.199 1.199 7 C -0.462 4.462 8 H 0.094 0.906 9 O -0.250 6.250 10 C -0.004 4.004 11 C 0.042 3.958 12 H 0.065 0.935 13 C -0.088 4.088 14 N -0.326 5.326 15 C -0.103 4.103 16 C -0.029 4.029 17 O -0.324 6.324 18 H 0.070 0.930 19 H 0.048 0.952 20 H 0.075 0.925 21 H 0.064 0.936 22 H 0.123 0.877 23 H 0.184 0.816 24 H 0.061 0.939 25 H 0.133 0.867 26 H 0.128 0.872 27 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.330 -12.864 -0.725 13.307 hybrid contribution 0.930 0.336 -0.453 1.088 sum 4.261 -12.527 -1.178 13.284 Atomic orbital electron populations 1.70241 1.07820 1.27212 1.53322 1.26345 0.96800 1.02283 0.98346 0.84618 0.78039 0.76021 0.78001 1.17807 1.20153 1.19889 1.21456 0.91026 0.83521 1.50158 0.90636 1.85628 1.33915 1.11862 1.93551 1.22342 0.93125 0.85692 0.99211 1.22085 0.93096 0.93744 0.86827 0.93498 1.22356 0.93819 0.89551 1.03065 1.60431 1.31076 1.05686 1.35361 1.22620 0.98206 0.98952 0.90488 1.22917 0.92099 0.85093 1.02815 1.88105 1.58094 1.47605 1.38629 0.93041 0.95233 0.92459 0.93588 0.87683 0.81592 0.93881 0.86732 0.87164 0.93391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -62.78 13.67 21.61 0.30 -62.48 15 2 C -0.05 -2.77 5.49 84.83 0.47 -2.30 15 3 Si 1.01 46.49 29.55 68.60 2.03 48.51 15 4 H -0.25 -10.72 7.11 99.48 0.71 -10.02 15 5 H -0.28 -12.28 7.11 99.48 0.71 -11.57 15 6 H -0.27 -12.05 7.11 99.48 0.71 -11.34 15 7 C -0.38 -23.82 9.89 67.92 0.67 -23.15 15 8 H 0.08 4.31 7.77 -2.91 -0.02 4.29 15 9 O -0.33 -20.93 9.75 -77.69 -0.76 -21.69 15 10 C 0.07 3.49 5.68 71.98 0.41 3.90 15 11 C 0.10 4.10 3.09 30.63 0.09 4.19 15 12 H 0.05 2.07 8.14 -2.39 -0.02 2.06 15 13 C 0.04 1.20 6.05 86.32 0.52 1.72 15 14 N -0.69 -16.59 6.92 -512.99 -3.55 -20.14 15 15 C 0.03 0.62 6.76 86.31 0.58 1.20 15 16 C 0.05 1.48 7.01 72.01 0.50 1.99 15 17 O -0.40 -17.61 10.44 -144.68 -1.51 -19.12 15 18 H 0.26 16.03 8.31 -92.71 -0.77 15.26 15 19 H 0.03 1.37 8.14 -2.39 -0.02 1.35 15 20 H 0.06 2.44 8.14 -2.38 -0.02 2.42 15 21 H 0.05 1.27 8.14 -2.39 -0.02 1.25 15 22 H 0.10 2.58 8.14 -2.39 -0.02 2.56 15 23 H 0.36 6.23 8.90 -89.69 -0.80 5.43 15 24 H 0.04 0.97 8.14 -2.39 -0.02 0.95 15 25 H 0.11 1.92 8.14 -2.39 -0.02 1.90 15 26 H 0.11 2.95 8.14 -2.39 -0.02 2.93 15 27 H 0.05 1.54 8.14 -2.39 -0.02 1.52 15 Total: -1.00 -78.50 233.89 0.11 -78.39 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: 0.35 Total: 8.99 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: 3.25 Total: -12.45 kcal Atomic # 7 Polarization: -79.37 SS G_CDS: -3.26 Total: -82.63 kcal Atomic # 8 Polarization: -38.55 SS G_CDS: -2.27 Total: -40.81 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.51 kcal Total: -78.50 0.11 -78.39 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168784501.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.195 kcal (2) G-P(sol) polarization free energy of solvation -78.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds