Wall clock time and date at job start Mon Mar 30 2020 02:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31588 * 1 3 3 Si 1.86800 * 119.99873 * 2 1 4 4 H 1.48492 * 109.47485 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46497 * 119.99850 * 3 2 1 6 6 H 1.48500 * 109.47264 * 239.99668 * 3 2 1 7 7 C 1.38633 * 119.99667 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99749 * 180.02562 * 7 2 1 9 9 O 1.34924 * 120.00265 * 359.97438 * 7 2 1 10 10 C 1.42900 * 116.99778 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46786 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.50692 * 55.00704 * 11 10 9 13 13 C 1.53101 * 109.50630 * 175.08916 * 11 10 9 14 14 N 1.47013 * 109.25899 * 176.78390 * 13 11 10 15 15 C 1.47009 * 110.75212 * 301.38465 * 14 13 11 16 16 C 1.53095 * 109.25956 * 58.61927 * 15 14 13 17 17 O 1.43019 * 109.50947 * 294.91731 * 11 10 9 18 18 H 0.97001 * 119.99805 * 179.97438 * 1 2 3 19 19 H 1.09002 * 109.47652 * 300.00253 * 10 9 7 20 20 H 1.08999 * 109.46855 * 60.00794 * 10 9 7 21 21 H 1.09003 * 109.50750 * 296.72326 * 13 11 10 22 22 H 1.09001 * 109.50346 * 56.85148 * 13 11 10 23 23 H 1.00899 * 111.00252 * 177.60563 * 14 13 11 24 24 H 1.09008 * 109.50677 * 178.54838 * 15 14 13 25 25 H 1.08994 * 109.51060 * 298.63486 * 15 14 13 26 26 H 1.09004 * 109.51225 * 63.08011 * 16 15 14 27 27 H 1.09004 * 109.51010 * 183.17266 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 1.2850 2.7465 0.0006 5 1 3.1035 1.6963 1.2126 6 1 3.1037 1.6964 -1.2124 7 6 2.0090 -1.2006 -0.0005 8 1 3.0890 -1.2007 -0.0001 9 8 1.3343 -2.3691 -0.0005 10 6 2.1127 -3.5675 -0.0017 11 6 1.1806 -4.7809 -0.0009 12 1 0.4906 -4.7104 -0.8418 13 6 2.0093 -6.0622 -0.1256 14 7 1.1159 -7.2271 -0.0468 15 6 0.3729 -7.2288 1.2218 16 6 -0.4394 -5.9359 1.3330 17 8 0.4406 -4.8139 1.2226 18 1 -0.4850 -0.8401 -0.0004 19 1 2.7409 -3.5921 -0.8921 20 1 2.7420 -3.5928 0.8879 21 1 2.5301 -6.0670 -1.0831 22 1 2.7365 -6.1057 0.6852 23 1 1.6310 -8.0865 -0.1653 24 1 -0.3009 -8.0853 1.2478 25 1 1.0739 -7.2918 2.0541 26 1 -1.1770 -5.8993 0.5313 27 1 -0.9477 -5.9071 2.2969 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168784597.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:25 Heat of formation + Delta-G solvation = -111.532798 kcal Electronic energy + Delta-G solvation = -11743.360507 eV Core-core repulsion = 9500.423159 eV Total energy + Delta-G solvation = -2242.937348 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 187.100 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.54897 -38.33279 -35.65223 -34.21526 -32.72797 -28.80626 -26.58376 -25.55254 -23.60039 -21.51993 -20.07397 -17.94434 -17.66532 -17.14351 -16.31703 -15.76892 -15.60394 -15.45394 -15.16697 -14.98745 -14.75213 -13.27841 -12.70702 -12.55900 -12.47889 -12.13743 -11.89575 -11.78970 -11.54519 -11.26516 -10.76680 -10.21723 -9.60744 -8.69394 -5.99029 1.52132 1.65388 1.83372 2.50150 2.71105 2.96555 3.17187 3.44328 3.89024 3.93620 4.01036 4.17291 4.32965 4.39611 4.47148 4.51056 4.61135 4.75973 4.87094 4.93985 5.33852 5.69284 6.19702 6.33397 6.41686 7.16231 7.87900 8.79466 Molecular weight = 187.10amu Principal moments of inertia in cm(-1) A = 0.091095 B = 0.008758 C = 0.008252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 307.295974 B = 3196.148508 C = 3392.426523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.067 4.067 3 Si 1.146 2.854 4 H -0.278 1.278 5 H -0.266 1.266 6 H -0.262 1.262 7 C -0.466 4.466 8 H 0.063 0.937 9 O -0.352 6.352 10 C 0.082 3.918 11 C 0.100 3.900 12 H 0.049 0.951 13 C 0.042 3.958 14 N -0.691 5.691 15 C 0.026 3.974 16 C 0.047 3.953 17 O -0.406 6.406 18 H 0.252 0.748 19 H 0.057 0.943 20 H 0.028 0.972 21 H 0.105 0.895 22 H 0.046 0.954 23 H 0.364 0.636 24 H 0.116 0.884 25 H 0.043 0.957 26 H 0.049 0.951 27 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.337 -13.932 1.002 14.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.259 4.259 3 Si 0.963 3.037 4 H -0.203 1.203 5 H -0.191 1.191 6 H -0.187 1.187 7 C -0.544 4.544 8 H 0.081 0.919 9 O -0.269 6.269 10 C 0.005 3.995 11 C 0.042 3.958 12 H 0.067 0.933 13 C -0.088 4.088 14 N -0.325 5.325 15 C -0.103 4.103 16 C -0.029 4.029 17 O -0.326 6.326 18 H 0.061 0.939 19 H 0.074 0.926 20 H 0.046 0.954 21 H 0.123 0.877 22 H 0.064 0.936 23 H 0.185 0.815 24 H 0.134 0.866 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.487 -11.915 0.791 12.440 hybrid contribution 0.814 -2.258 0.467 2.445 sum 4.301 -14.172 1.258 14.864 Atomic orbital electron populations 1.70713 1.07634 1.29255 1.50420 1.28160 0.97138 1.04805 0.95789 0.82558 0.73518 0.69309 0.78266 1.20291 1.19112 1.18679 1.22196 0.91954 0.85027 1.55226 0.91940 1.85331 1.34893 1.12483 1.94201 1.22273 0.93025 0.85030 0.99180 1.22091 0.93093 0.93680 0.86905 0.93340 1.22344 0.93822 0.89522 1.03091 1.60433 1.30996 1.05610 1.35439 1.22625 0.98227 0.98991 0.90476 1.22940 0.92054 0.85024 1.02917 1.88098 1.58140 1.47562 1.38774 0.93936 0.92554 0.95356 0.87678 0.93610 0.81501 0.86603 0.93880 0.93244 0.87040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -63.84 13.70 21.61 0.30 -63.55 15 2 C -0.07 -4.18 5.49 84.82 0.47 -3.71 15 3 Si 1.15 52.15 29.92 68.60 2.05 54.20 15 4 H -0.28 -12.53 7.11 99.48 0.71 -11.82 15 5 H -0.27 -11.04 7.11 99.48 0.71 -10.33 15 6 H -0.26 -10.71 7.11 99.48 0.71 -10.00 15 7 C -0.47 -29.33 9.89 67.91 0.67 -28.66 15 8 H 0.06 3.67 7.77 -2.91 -0.02 3.65 15 9 O -0.35 -21.97 9.15 -77.51 -0.71 -22.68 15 10 C 0.08 3.91 5.68 71.98 0.41 4.32 15 11 C 0.10 4.04 3.09 30.63 0.09 4.13 15 12 H 0.05 2.10 8.14 -2.39 -0.02 2.08 15 13 C 0.04 1.19 6.05 86.32 0.52 1.71 15 14 N -0.69 -16.27 6.92 -513.00 -3.55 -19.82 15 15 C 0.03 0.59 6.76 86.31 0.58 1.17 15 16 C 0.05 1.44 7.01 72.01 0.50 1.94 15 17 O -0.41 -17.35 10.44 -144.55 -1.51 -18.85 15 18 H 0.25 18.03 7.97 -92.71 -0.74 17.29 15 19 H 0.06 2.44 8.14 -2.39 -0.02 2.42 15 20 H 0.03 1.34 8.14 -2.39 -0.02 1.32 15 21 H 0.11 2.57 8.14 -2.39 -0.02 2.55 15 22 H 0.05 1.26 8.14 -2.39 -0.02 1.24 15 23 H 0.36 6.11 8.90 -89.70 -0.80 5.31 15 24 H 0.12 1.88 8.14 -2.38 -0.02 1.86 15 25 H 0.04 0.95 8.14 -2.39 -0.02 0.93 15 26 H 0.05 1.54 8.14 -2.38 -0.02 1.52 15 27 H 0.11 2.90 8.14 -2.38 -0.02 2.88 15 Total: -1.00 -79.12 233.34 0.22 -78.90 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: 0.39 Total: 10.88 kcal Atomic # 6 Polarization: -22.34 SS G_CDS: 3.25 Total: -19.08 kcal Atomic # 7 Polarization: -80.11 SS G_CDS: -3.26 Total: -83.36 kcal Atomic # 8 Polarization: -39.32 SS G_CDS: -2.22 Total: -41.53 kcal Atomic # 14 Polarization: 52.15 SS G_CDS: 2.05 Total: 54.20 kcal Total: -79.12 0.22 -78.90 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168784597.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.633 kcal (2) G-P(sol) polarization free energy of solvation -79.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds