Wall clock time and date at job start Mon Mar 30 2020 01:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31473 * 1 3 3 Si 1.86793 * 120.00257 * 2 1 4 4 H 1.48494 * 109.47337 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47288 * 299.99956 * 3 2 1 6 6 H 1.48505 * 109.46831 * 59.99746 * 3 2 1 7 7 C 1.38881 * 119.99513 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99922 * 186.92581 * 7 2 1 9 9 N 1.37199 * 120.00701 * 6.92550 * 7 2 1 10 10 C 1.47091 * 125.55230 * 354.27445 * 9 7 2 11 11 C 1.54093 * 103.78049 * 179.97438 * 10 9 7 12 12 H 1.08998 * 110.51723 * 241.36747 * 11 10 9 13 13 C 1.53000 * 110.52310 * 118.62659 * 11 10 9 14 14 O 1.42895 * 109.47197 * 174.99764 * 13 11 10 15 15 O 1.45704 * 104.00680 * 359.76256 * 11 10 9 16 16 C 1.33793 * 109.47342 * 0.39814 * 15 11 10 17 17 O 1.21510 * 123.07195 * 179.82774 * 16 15 11 18 18 H 0.96998 * 119.99392 * 0.02562 * 1 2 3 19 19 H 1.09002 * 110.56315 * 298.54800 * 10 9 7 20 20 H 1.09002 * 110.56880 * 61.40059 * 10 9 7 21 21 H 1.08997 * 109.47306 * 295.00683 * 13 11 10 22 22 H 1.09007 * 109.46654 * 55.00178 * 13 11 10 23 23 H 0.96698 * 113.99821 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3147 0.0000 0.0000 3 14 2.2488 1.6176 0.0000 4 1 3.7087 1.3463 0.0006 5 1 1.8901 2.3964 -1.2125 6 1 1.8899 2.3963 1.2125 7 6 2.0090 -1.2028 0.0005 8 1 3.0831 -1.2062 0.1133 9 7 1.3306 -2.3867 -0.1422 10 6 -0.1323 -2.5344 -0.1847 11 6 -0.3432 -4.0512 -0.3564 12 1 -0.8641 -4.2611 -1.2906 13 6 -1.1189 -4.6228 0.8320 14 8 -1.4030 -6.0032 0.5959 15 8 1.0088 -4.5928 -0.3981 16 6 1.8925 -3.5969 -0.2663 17 8 3.0947 -3.7731 -0.2643 18 1 -0.4849 0.8401 -0.0004 19 1 -0.5792 -2.1888 0.7474 20 1 -0.5475 -1.9916 -1.0339 21 1 -0.5204 -4.5247 1.7377 22 1 -2.0536 -4.0750 0.9531 23 1 -1.8938 -6.4315 1.3105 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000210195174.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:37 Heat of formation + Delta-G solvation = -114.900176 kcal Electronic energy + Delta-G solvation = -11772.483523 eV Core-core repulsion = 9393.567060 eV Total energy + Delta-G solvation = -2378.916463 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 187.068 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.40982 -36.77068 -35.49404 -34.83384 -31.67710 -30.12183 -26.04257 -24.26951 -21.68165 -20.39362 -17.81486 -17.32513 -16.09706 -15.53894 -15.26960 -14.69634 -14.14454 -13.53938 -13.11368 -12.84835 -12.41680 -11.76689 -11.65985 -11.12573 -11.03609 -10.41519 -10.39336 -9.92490 -9.68586 -9.28579 -9.15453 -8.06465 -6.48458 -3.96951 3.10466 3.19544 3.26347 3.80848 3.96431 4.17117 4.31970 4.92979 5.04446 5.24343 5.35788 5.42950 5.69655 5.99673 6.35958 6.69624 6.97049 7.41313 7.73947 8.11302 8.40494 8.96518 9.22743 9.82181 10.62728 Molecular weight = 187.07amu Principal moments of inertia in cm(-1) A = 0.059692 B = 0.013036 C = 0.011034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.958305 B = 2147.397799 C = 2536.966408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.026 3.974 3 Si 0.938 3.062 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.281 1.281 7 C -0.285 4.285 8 H 0.109 0.891 9 N -0.462 5.462 10 C 0.114 3.886 11 C 0.055 3.945 12 H 0.104 0.896 13 C 0.074 3.926 14 O -0.568 6.568 15 O -0.338 6.338 16 C 0.578 3.422 17 O -0.572 6.572 18 H 0.270 0.730 19 H 0.089 0.911 20 H 0.096 0.904 21 H 0.055 0.945 22 H 0.067 0.933 23 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.625 -2.451 1.800 7.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.175 4.175 3 Si 0.764 3.236 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.207 1.207 7 C -0.411 4.411 8 H 0.127 0.873 9 N -0.196 5.196 10 C -0.011 4.011 11 C -0.002 4.002 12 H 0.122 0.878 13 C -0.004 4.004 14 O -0.373 6.373 15 O -0.249 6.249 16 C 0.332 3.668 17 O -0.463 6.463 18 H 0.081 0.919 19 H 0.107 0.893 20 H 0.114 0.886 21 H 0.073 0.927 22 H 0.085 0.915 23 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -5.800 -2.470 1.222 6.421 hybrid contribution -0.243 0.883 0.575 1.081 sum -6.043 -1.588 1.797 6.501 Atomic orbital electron populations 1.69853 1.05758 1.27697 1.50592 1.25250 0.95904 0.99591 0.96749 0.85666 0.79609 0.80488 0.77826 1.19143 1.20508 1.20660 1.19551 0.92910 0.80248 1.48401 0.87340 1.43639 1.04761 1.05286 1.65955 1.22509 0.84151 0.88972 1.05435 1.24023 0.82099 0.94644 0.99478 0.87829 1.22518 0.98282 0.82278 0.97311 1.86536 1.79045 1.23866 1.47848 1.87226 1.16574 1.33681 1.87448 1.18441 0.85527 0.80230 0.82644 1.90836 1.10084 1.84332 1.61038 0.91950 0.89284 0.88577 0.92671 0.91472 0.77777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.83 10.42 55.49 0.58 -22.25 14 2 C 0.03 0.68 5.48 -17.47 -0.10 0.58 14 3 Si 0.94 20.22 29.56 -169.99 -5.02 15.20 14 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 14 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 14 6 H -0.28 -5.95 7.11 56.52 0.40 -5.54 14 7 C -0.29 -7.90 9.93 -14.91 -0.15 -8.04 14 8 H 0.11 3.09 7.69 -52.49 -0.40 2.69 14 9 N -0.46 -12.29 3.08 -119.63 -0.37 -12.66 14 10 C 0.11 2.50 5.31 -3.15 -0.02 2.48 14 11 C 0.05 1.06 4.14 -26.16 -0.11 0.95 14 12 H 0.10 1.79 8.14 -51.93 -0.42 1.37 14 13 C 0.07 1.15 6.60 37.16 0.25 1.39 14 14 O -0.57 -8.44 13.66 -35.23 -0.48 -8.92 14 15 O -0.34 -8.19 10.81 -38.46 -0.42 -8.61 14 16 C 0.58 15.85 8.80 53.71 0.47 16.32 14 17 O -0.57 -17.46 17.54 -19.12 -0.34 -17.80 14 18 H 0.27 6.47 8.31 -40.82 -0.34 6.13 14 19 H 0.09 1.94 7.23 -51.93 -0.38 1.56 14 20 H 0.10 2.15 7.39 -51.93 -0.38 1.77 14 21 H 0.05 0.88 8.14 -51.93 -0.42 0.46 14 22 H 0.07 0.84 8.14 -51.92 -0.42 0.42 14 23 H 0.38 3.43 9.12 45.56 0.42 3.85 14 LS Contribution 210.81 15.07 3.18 3.18 Total: -1.00 -32.73 210.81 -3.67 -36.40 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -1.15 Total: 1.78 kcal Atomic # 6 Polarization: 13.33 SS G_CDS: 0.35 Total: 13.68 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: 0.21 Total: -34.91 kcal Atomic # 8 Polarization: -34.09 SS G_CDS: -1.23 Total: -35.33 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 3.18 Total: 3.18 kcal Total: -32.73 -3.67 -36.40 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000210195174.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.496 kcal (2) G-P(sol) polarization free energy of solvation -32.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds