Wall clock time and date at job start Mon Mar 30 2020 01:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86803 * 120.00110 * 2 1 4 4 H 1.48502 * 109.47052 * 269.99558 * 3 2 1 5 5 H 1.48497 * 109.47019 * 29.99928 * 3 2 1 6 6 H 1.48501 * 109.47196 * 149.99654 * 3 2 1 7 7 C 1.38801 * 119.99821 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99565 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00117 * 359.97438 * 7 2 1 10 10 C 1.80996 * 99.99951 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.50681 * 55.08253 * 10 9 7 12 12 C 1.53126 * 109.50079 * 175.19973 * 10 9 7 13 13 C 1.53099 * 109.15071 * 177.59381 * 12 10 9 14 14 C 1.53034 * 109.29509 * 302.33888 * 13 12 10 15 15 N 1.46847 * 109.51345 * 59.18740 * 14 13 12 16 16 C 1.46854 * 111.19790 * 298.26320 * 15 14 13 17 17 H 0.96998 * 119.99744 * 0.02562 * 1 2 3 18 18 H 1.08990 * 109.52264 * 297.50045 * 12 10 9 19 19 H 1.09002 * 109.52383 * 57.62830 * 12 10 9 20 20 H 1.09007 * 109.48839 * 182.39531 * 13 12 10 21 21 H 1.09009 * 109.50682 * 62.29317 * 13 12 10 22 22 H 1.09002 * 109.46271 * 299.17460 * 14 13 12 23 23 H 1.08994 * 109.46242 * 179.19760 * 14 13 12 24 24 H 1.00899 * 111.00257 * 174.16817 * 15 14 13 25 25 H 1.08993 * 109.46229 * 181.76227 * 16 15 14 26 26 H 1.09008 * 109.45803 * 301.73838 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0019 10 6 2.5158 -3.8914 0.0029 11 1 3.1726 -3.6741 0.8452 12 6 1.9828 -5.3217 0.1250 13 6 3.1571 -6.3022 0.0646 14 6 3.9219 -6.0951 -1.2446 15 7 4.4117 -4.7124 -1.3132 16 6 3.2991 -3.7539 -1.3045 17 1 -0.4850 0.8400 -0.0004 18 1 1.4611 -5.4362 1.0751 19 1 1.2945 -5.5252 -0.6954 20 1 2.7803 -7.3241 0.1083 21 1 3.8242 -6.1235 0.9080 22 1 3.2580 -6.2875 -2.0874 23 1 4.7671 -6.7821 -1.2840 24 1 4.9996 -4.5767 -2.1219 25 1 3.6920 -2.7407 -1.3877 26 1 2.6380 -3.9574 -2.1470 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000212735587.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:56 Heat of formation + Delta-G solvation = -19.720833 kcal Electronic energy + Delta-G solvation = -9703.063783 eV Core-core repulsion = 7906.860572 eV Total energy + Delta-G solvation = -1796.203211 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 187.073 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.88495 -32.43162 -31.63235 -30.34864 -25.56041 -23.27177 -22.47540 -19.37253 -17.56716 -16.23034 -14.79293 -14.45212 -14.25722 -13.48167 -13.38657 -12.99572 -12.68178 -12.08712 -11.28647 -11.06618 -10.92674 -10.82668 -10.44307 -10.34710 -10.01429 -9.32926 -9.04639 -8.22574 -8.10588 -6.54481 -6.20809 -3.91123 3.23150 3.24600 3.31023 3.56209 4.21265 4.68167 5.14472 5.21304 5.28880 5.31968 5.57017 5.67004 5.82360 6.01479 6.06940 6.16155 6.29294 6.38717 6.44373 6.77195 6.86663 7.37031 7.64241 7.70844 8.39930 9.26000 10.87429 Molecular weight = 187.07amu Principal moments of inertia in cm(-1) A = 0.068459 B = 0.011198 C = 0.010038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 408.904777 B = 2499.746827 C = 2788.791402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.070 3.930 3 Si 0.917 3.083 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.512 4.512 8 H 0.075 0.925 9 S -0.128 6.128 10 C -0.078 4.078 11 H 0.075 0.925 12 C -0.098 4.098 13 C -0.113 4.113 14 C 0.059 3.941 15 N -0.694 5.694 16 C 0.072 3.928 17 H 0.267 0.733 18 H 0.066 0.934 19 H 0.060 0.940 20 H 0.061 0.939 21 H 0.067 0.933 22 H 0.025 0.975 23 H 0.066 0.934 24 H 0.335 0.665 25 H 0.080 0.920 26 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.845 -8.580 -2.072 10.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.138 4.138 3 Si 0.743 3.257 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.661 4.661 8 H 0.093 0.907 9 S 0.102 5.898 10 C -0.208 4.208 11 H 0.093 0.907 12 C -0.137 4.137 13 C -0.152 4.152 14 C -0.071 4.071 15 N -0.326 5.326 16 C -0.059 4.059 17 H 0.076 0.924 18 H 0.085 0.915 19 H 0.079 0.921 20 H 0.080 0.920 21 H 0.086 0.914 22 H 0.044 0.956 23 H 0.084 0.916 24 H 0.152 0.848 25 H 0.098 0.902 26 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 4.628 -8.591 -1.374 9.855 hybrid contribution 1.468 1.218 -0.915 2.116 sum 6.096 -7.372 -2.289 9.837 Atomic orbital electron populations 1.70025 1.05928 1.27261 1.47489 1.25017 0.95053 0.99070 0.94685 0.86184 0.79520 0.81629 0.78326 1.20332 1.20824 1.19624 1.22712 0.94561 0.90624 1.58153 0.90723 1.84651 1.09242 0.99445 1.96490 1.23089 1.00700 0.97733 0.99240 0.90699 1.21355 0.96904 0.93228 1.02174 1.21591 0.97430 0.98369 0.97839 1.21875 0.97840 0.90319 0.97026 1.60399 1.21949 1.03471 1.46747 1.22302 0.91061 0.95898 0.96617 0.92371 0.91539 0.92097 0.92033 0.91439 0.95633 0.91602 0.84835 0.90161 0.94866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.10 13.22 55.49 0.73 -25.37 15 2 C 0.07 2.00 5.49 -17.43 -0.10 1.91 15 3 Si 0.92 21.65 29.55 -169.99 -5.02 16.62 15 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 15 7 C -0.51 -14.61 8.87 30.94 0.27 -14.34 15 8 H 0.07 2.08 7.14 -52.48 -0.37 1.71 15 9 S -0.13 -3.38 20.89 -107.50 -2.25 -5.62 15 10 C -0.08 -1.65 2.63 -26.65 -0.07 -1.72 15 11 H 0.07 1.68 8.14 -51.92 -0.42 1.25 15 12 C -0.10 -1.71 5.29 -26.62 -0.14 -1.86 15 13 C -0.11 -1.63 6.09 -26.66 -0.16 -1.79 15 14 C 0.06 0.82 6.55 -3.84 -0.03 0.80 15 15 N -0.69 -11.12 6.85 -113.81 -0.78 -11.90 15 16 C 0.07 1.40 5.69 -3.83 -0.02 1.37 15 17 H 0.27 7.45 8.31 -40.82 -0.34 7.11 15 18 H 0.07 1.15 8.14 -51.93 -0.42 0.72 15 19 H 0.06 1.07 8.14 -51.93 -0.42 0.65 15 20 H 0.06 0.74 8.14 -51.93 -0.42 0.32 15 21 H 0.07 1.00 8.14 -51.92 -0.42 0.57 15 22 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 15 23 H 0.07 0.78 8.14 -51.93 -0.42 0.35 15 24 H 0.33 4.59 8.90 -39.29 -0.35 4.24 15 25 H 0.08 1.70 6.96 -51.93 -0.36 1.34 15 26 H 0.03 0.65 8.14 -51.92 -0.42 0.23 15 LS Contribution 228.88 15.07 3.45 3.45 Total: -1.00 -30.36 228.88 -7.71 -38.07 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -3.60 Total: 0.37 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: -0.24 Total: -15.62 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: -0.05 Total: -37.27 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: -3.38 SS G_CDS: -2.25 Total: -5.62 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -30.36 -7.71 -38.07 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212735587.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.346 kcal (2) G-P(sol) polarization free energy of solvation -30.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds