Wall clock time and date at job start Mon Mar 30 2020 01:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99975 * 2 1 4 4 H 1.48499 * 109.47249 * 269.99933 * 3 2 1 5 5 H 1.48496 * 109.47065 * 30.00325 * 3 2 1 6 6 H 1.48502 * 109.47136 * 149.99873 * 3 2 1 7 7 C 1.38801 * 120.00375 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99579 * 0.02562 * 7 2 1 9 9 S 1.76194 * 120.00302 * 179.97438 * 7 2 1 10 10 C 1.80998 * 99.99913 * 180.02562 * 9 7 2 11 11 H 1.09005 * 109.54011 * 305.09546 * 10 9 7 12 12 C 1.53125 * 109.50566 * 185.00304 * 10 9 7 13 13 C 1.53114 * 109.16368 * 182.40517 * 12 10 9 14 14 C 1.53037 * 109.31211 * 57.63311 * 13 12 10 15 15 N 1.46854 * 109.52285 * 300.88400 * 14 13 12 16 16 C 1.46840 * 111.23238 * 61.67711 * 15 14 13 17 17 H 0.97005 * 120.00472 * 0.02562 * 1 2 3 18 18 H 1.08998 * 109.52257 * 62.49711 * 12 10 9 19 19 H 1.09004 * 109.56800 * 302.34420 * 12 10 9 20 20 H 1.09002 * 109.50377 * 177.59436 * 13 12 10 21 21 H 1.09003 * 109.50316 * 297.67431 * 13 12 10 22 22 H 1.09000 * 109.46159 * 60.85546 * 14 13 12 23 23 H 1.09000 * 109.46461 * 180.82902 * 14 13 12 24 24 H 1.00891 * 110.99725 * 185.80422 * 15 14 13 25 25 H 1.09001 * 109.46294 * 178.26219 * 16 15 14 26 26 H 1.09005 * 109.46534 * 58.30014 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0014 9 16 3.7723 -1.2020 -0.0012 10 6 4.0865 -2.9845 -0.0025 11 1 3.5685 -3.4466 0.8379 12 6 5.5914 -3.2384 0.1226 13 6 5.8537 -4.7456 0.0602 14 6 5.2946 -5.3028 -1.2508 15 7 3.8526 -5.0346 -1.3228 16 6 3.5789 -3.5919 -1.3122 17 1 -0.4851 0.8400 -0.0004 18 1 5.9492 -2.8454 1.0742 19 1 6.1145 -2.7434 -0.6957 20 1 6.9270 -4.9304 0.1059 21 1 5.3640 -5.2353 0.9020 22 1 5.7950 -4.8231 -2.0920 23 1 5.4670 -6.3784 -1.2912 24 1 3.4430 -5.4744 -2.1331 25 1 2.5051 -3.4254 -1.3976 26 1 4.0874 -3.1196 -2.1528 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000212735650.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:58 Heat of formation + Delta-G solvation = -40.809504 kcal Electronic energy + Delta-G solvation = -9726.118084 eV Core-core repulsion = 7929.000399 eV Total energy + Delta-G solvation = -1797.117685 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 187.073 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.29620 -34.68457 -33.05679 -31.79150 -27.91277 -24.72476 -23.92931 -20.88423 -19.64190 -17.70722 -17.09945 -16.17829 -15.53293 -14.99793 -14.96524 -14.73993 -14.38038 -13.67584 -13.37357 -13.07597 -12.83029 -12.40813 -11.97807 -11.78486 -11.51785 -11.25126 -11.12691 -10.46094 -9.42393 -9.03511 -8.50447 -6.22159 1.10504 1.30810 1.46520 1.71552 2.24425 2.66580 2.87217 3.38632 3.83312 3.89303 4.10716 4.26196 4.38674 4.64949 4.72301 4.79843 4.93548 4.99709 5.08232 5.25309 5.40292 5.72061 6.02639 6.13400 6.49444 6.93506 8.62623 Molecular weight = 187.07amu Principal moments of inertia in cm(-1) A = 0.072229 B = 0.011751 C = 0.010613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 387.565295 B = 2382.138867 C = 2637.763126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.037 3.963 3 Si 0.924 3.076 4 H -0.262 1.262 5 H -0.264 1.264 6 H -0.230 1.230 7 C -0.513 4.513 8 H 0.051 0.949 9 S -0.216 6.216 10 C -0.040 4.040 11 H 0.060 0.940 12 C -0.097 4.097 13 C -0.108 4.108 14 C 0.055 3.945 15 N -0.698 5.698 16 C 0.081 3.919 17 H 0.276 0.724 18 H 0.072 0.928 19 H 0.067 0.933 20 H 0.098 0.902 21 H 0.064 0.936 22 H 0.035 0.965 23 H 0.097 0.903 24 H 0.351 0.649 25 H 0.047 0.953 26 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.311 -7.116 -2.288 14.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.167 4.167 3 Si 0.746 3.254 4 H -0.186 1.186 5 H -0.188 1.188 6 H -0.154 1.154 7 C -0.661 4.661 8 H 0.069 0.931 9 S 0.014 5.986 10 C -0.169 4.169 11 H 0.079 0.921 12 C -0.136 4.136 13 C -0.147 4.147 14 C -0.074 4.074 15 N -0.331 5.331 16 C -0.050 4.050 17 H 0.085 0.915 18 H 0.090 0.910 19 H 0.086 0.914 20 H 0.117 0.883 21 H 0.082 0.918 22 H 0.053 0.947 23 H 0.116 0.884 24 H 0.170 0.830 25 H 0.066 0.934 26 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 12.766 -6.189 -1.601 14.277 hybrid contribution -1.280 0.037 -0.861 1.544 sum 11.486 -6.152 -2.462 13.260 Atomic orbital electron populations 1.70040 1.07626 1.28991 1.49472 1.25764 0.95388 1.02649 0.92933 0.85733 0.80722 0.78820 0.80154 1.18626 1.18830 1.15374 1.22292 0.89805 0.96118 1.57873 0.93072 1.83817 1.07880 1.09679 1.97251 1.22941 1.00505 0.93647 0.99798 0.92111 1.21448 0.91286 0.98055 1.02777 1.21611 1.01876 0.93225 0.97980 1.22065 0.86693 1.01610 0.97047 1.60265 1.14512 1.10476 1.47880 1.21944 0.99609 0.88069 0.95399 0.91483 0.90972 0.91407 0.88321 0.91771 0.94715 0.88449 0.83041 0.93401 0.94705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.45 13.97 21.65 0.30 -57.14 15 2 C 0.04 2.20 5.50 84.86 0.47 2.67 15 3 Si 0.92 44.57 27.74 68.60 1.90 46.47 15 4 H -0.26 -12.21 7.11 99.48 0.71 -11.50 15 5 H -0.26 -12.06 7.11 99.48 0.71 -11.36 15 6 H -0.23 -10.71 6.74 99.48 0.67 -10.04 15 7 C -0.51 -30.57 9.42 67.95 0.64 -29.93 15 8 H 0.05 3.35 7.38 -2.91 -0.02 3.33 15 9 S -0.22 -10.57 18.86 -56.49 -1.07 -11.63 15 10 C -0.04 -1.60 2.63 30.65 0.08 -1.52 15 11 H 0.06 2.70 8.14 -2.39 -0.02 2.68 15 12 C -0.10 -2.96 5.29 30.67 0.16 -2.79 15 13 C -0.11 -2.55 6.09 30.64 0.19 -2.36 15 14 C 0.05 1.27 6.55 86.32 0.57 1.83 15 15 N -0.70 -20.87 6.84 -514.00 -3.52 -24.39 15 16 C 0.08 3.09 5.69 86.33 0.49 3.58 15 17 H 0.28 15.82 8.31 -92.70 -0.77 15.05 15 18 H 0.07 2.14 8.14 -2.39 -0.02 2.12 15 19 H 0.07 2.01 8.14 -2.38 -0.02 1.99 15 20 H 0.10 1.72 8.14 -2.39 -0.02 1.70 15 21 H 0.06 1.61 8.14 -2.39 -0.02 1.59 15 22 H 0.03 0.77 8.14 -2.39 -0.02 0.75 15 23 H 0.10 1.76 8.14 -2.39 -0.02 1.74 15 24 H 0.35 8.97 8.90 -89.70 -0.80 8.17 15 25 H 0.05 2.17 6.97 -2.39 -0.02 2.15 15 26 H 0.03 1.30 8.14 -2.38 -0.02 1.28 15 Total: -1.00 -66.09 226.23 0.54 -65.55 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: 0.32 Total: 9.66 kcal Atomic # 6 Polarization: -31.11 SS G_CDS: 2.59 Total: -28.52 kcal Atomic # 7 Polarization: -78.32 SS G_CDS: -3.22 Total: -81.53 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.90 Total: 46.47 kcal Atomic # 16 Polarization: -10.57 SS G_CDS: -1.07 Total: -11.63 kcal Total: -66.09 0.54 -65.55 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212735650.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.741 kcal (2) G-P(sol) polarization free energy of solvation -66.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds