Wall clock time and date at job start Mon Mar 30 2020 01:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 F 1.39900 * 109.47126 * 2 1 4 4 C 1.53006 * 109.47223 * 119.99625 * 2 1 3 5 5 C 1.52997 * 109.47164 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.46978 * 299.99874 * 5 4 2 7 7 C 1.52996 * 109.46891 * 60.00410 * 6 5 4 8 8 H 1.09001 * 109.47372 * 59.99964 * 7 6 5 9 9 C 1.50703 * 109.46946 * 179.97438 * 7 6 5 10 10 H 1.08001 * 119.99776 * 120.00427 * 9 7 6 11 11 C 1.37877 * 120.00001 * 299.99459 * 9 7 6 12 12 N 1.31511 * 120.00114 * 0.02562 * 11 9 7 13 13 Si 1.86803 * 119.99955 * 179.97438 * 11 9 7 14 14 H 1.48506 * 109.46725 * 60.00489 * 13 11 9 15 15 H 1.48505 * 109.46988 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47116 * 300.00464 * 13 11 9 17 17 C 1.52997 * 109.47482 * 239.99914 * 2 1 3 18 18 H 1.09001 * 109.47066 * 180.02562 * 1 2 3 19 19 H 1.08996 * 109.47747 * 299.99921 * 1 2 3 20 20 H 1.09002 * 109.47103 * 60.00333 * 1 2 3 21 21 H 1.09001 * 109.47002 * 60.00080 * 4 2 1 22 22 H 1.09000 * 109.47050 * 300.00346 * 4 2 1 23 23 H 1.09002 * 109.47045 * 180.02562 * 5 4 2 24 24 H 1.09001 * 109.47375 * 59.99966 * 5 4 2 25 25 H 1.08992 * 109.47056 * 300.00064 * 6 5 4 26 26 H 1.09004 * 109.47006 * 180.02562 * 6 5 4 27 27 H 0.97000 * 120.00354 * 180.02562 * 12 11 9 28 28 H 1.09002 * 109.47153 * 59.99783 * 17 2 1 29 29 H 1.09001 * 109.46832 * 299.99974 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5699 -0.7206 1.2496 6 6 4.0804 -1.4416 0.0004 7 6 3.5705 -0.7204 -1.2488 8 1 3.9335 0.3074 -1.2486 9 6 4.0738 -1.4302 -2.4792 10 1 3.3725 -1.8409 -3.1906 11 6 5.4295 -1.5551 -2.6969 12 7 6.2834 -1.0553 -1.8306 13 14 6.0534 -2.4355 -4.2218 14 1 5.5583 -1.7360 -5.4346 15 1 7.5385 -2.4349 -4.2209 16 1 5.5595 -3.8359 -4.2217 17 6 2.0400 -0.7212 -1.2492 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8900 21 1 1.6766 -1.7489 1.2494 22 1 1.6766 -0.2073 2.1393 23 1 3.9333 -1.2348 2.1394 24 1 3.9329 0.3072 1.2498 25 1 3.7175 -2.4693 0.0003 26 1 5.1705 -1.4416 0.0009 27 1 7.2372 -1.1428 -1.9839 28 1 1.6767 -0.2075 -2.1392 29 1 1.6767 -1.7489 -1.2491 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213714113.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:45 Heat of formation + Delta-G solvation = -98.851643 kcal Electronic energy + Delta-G solvation = -12039.571634 eV Core-core repulsion = 9874.982883 eV Total energy + Delta-G solvation = -2164.588751 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.112 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.48953 -38.75049 -34.97786 -32.71137 -31.72414 -27.25703 -26.85671 -23.01904 -22.03073 -20.33939 -18.41347 -16.78321 -16.52160 -16.17776 -15.83760 -15.22724 -14.48135 -14.29723 -13.75609 -13.44474 -13.12948 -12.98869 -12.84494 -12.77558 -12.52603 -12.09940 -11.81295 -11.78018 -11.62144 -11.22011 -10.68355 -10.50401 -10.32376 -8.07275 -6.22869 1.40985 1.42764 1.50395 2.43166 3.18476 3.72345 3.83074 3.87816 4.00054 4.41614 4.55980 4.63322 4.75504 4.82488 4.91733 4.95238 5.01724 5.08788 5.20464 5.36895 5.44025 5.46245 5.60199 5.67208 6.02501 6.19638 6.38410 6.90060 7.45219 8.96621 Molecular weight = 186.11amu Principal moments of inertia in cm(-1) A = 0.061753 B = 0.012292 C = 0.011346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.306946 B = 2277.373824 C = 2467.243378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.105 3.895 3 F -0.233 7.233 4 C -0.126 4.126 5 C -0.117 4.117 6 C -0.105 4.105 7 C 0.043 3.957 8 H -0.015 1.015 9 C -0.537 4.537 10 H 0.054 0.946 11 C 0.009 3.991 12 N -0.918 5.918 13 Si 0.956 3.044 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.268 1.268 17 C -0.121 4.121 18 H 0.092 0.908 19 H 0.077 0.923 20 H 0.063 0.937 21 H 0.093 0.907 22 H 0.084 0.916 23 H 0.069 0.931 24 H 0.036 0.964 25 H 0.036 0.964 26 H 0.056 0.944 27 H 0.260 0.740 28 H 0.048 0.952 29 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.237 -1.040 4.771 10.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.087 3.913 3 F -0.214 7.214 4 C -0.163 4.163 5 C -0.155 4.155 6 C -0.143 4.143 7 C 0.025 3.975 8 H 0.003 0.997 9 C -0.575 4.575 10 H 0.072 0.928 11 C -0.189 4.189 12 N -0.558 5.558 13 Si 0.781 3.219 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.193 1.193 17 C -0.158 4.158 18 H 0.110 0.890 19 H 0.096 0.904 20 H 0.082 0.918 21 H 0.111 0.889 22 H 0.103 0.897 23 H 0.088 0.912 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.042 -0.989 4.802 10.286 hybrid contribution 0.914 -0.097 -0.942 1.316 sum -8.128 -1.085 3.860 9.063 Atomic orbital electron populations 1.22307 0.91448 1.04636 1.03462 1.21291 0.95569 0.77048 0.97422 1.92753 1.90985 1.39834 1.97789 1.22061 0.95754 1.01964 0.96522 1.21532 0.95845 0.99714 0.98412 1.21450 1.01613 0.97221 0.94048 1.18592 0.90895 0.94166 0.93842 0.99685 1.21584 0.92071 1.36540 1.07340 0.92767 1.25801 0.97296 0.96389 0.99418 1.70040 1.02110 1.46678 1.36966 0.85648 0.76988 0.79336 0.79901 1.19814 1.21000 1.19254 1.22105 0.97708 1.00334 0.95697 0.88961 0.90364 0.91802 0.88868 0.89748 0.91230 0.94508 0.94492 0.92580 0.93102 0.93324 0.90376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.10 8.93 71.98 0.64 -3.46 15 2 C 0.10 3.68 1.23 -10.79 -0.01 3.67 15 3 F -0.23 -9.72 15.77 44.97 0.71 -9.01 15 4 C -0.13 -3.99 5.00 30.60 0.15 -3.83 15 5 C -0.12 -4.62 5.80 30.59 0.18 -4.44 15 6 C -0.11 -5.10 4.98 30.59 0.15 -4.95 15 7 C 0.04 2.28 1.98 -11.52 -0.02 2.25 15 8 H -0.02 -0.91 7.80 -2.39 -0.02 -0.93 15 9 C -0.54 -30.49 8.56 25.60 0.22 -30.27 15 10 H 0.05 2.98 7.74 -2.91 -0.02 2.95 15 11 C 0.01 0.53 5.30 84.66 0.45 0.98 15 12 N -0.92 -54.91 11.32 21.45 0.24 -54.66 15 13 Si 0.96 44.40 29.54 68.60 2.03 46.42 15 14 H -0.27 -12.37 7.11 99.48 0.71 -11.66 15 15 H -0.28 -12.97 7.11 99.48 0.71 -12.26 15 16 H -0.27 -11.91 7.11 99.48 0.71 -11.20 15 17 C -0.12 -5.05 4.22 30.61 0.13 -4.92 15 18 H 0.09 1.94 8.14 -2.39 -0.02 1.92 15 19 H 0.08 1.70 8.14 -2.39 -0.02 1.68 15 20 H 0.06 1.61 8.14 -2.39 -0.02 1.59 15 21 H 0.09 2.58 8.14 -2.39 -0.02 2.56 15 22 H 0.08 2.25 8.14 -2.39 -0.02 2.23 15 23 H 0.07 2.38 8.14 -2.39 -0.02 2.36 15 24 H 0.04 1.58 7.80 -2.39 -0.02 1.56 15 25 H 0.04 1.71 8.14 -2.39 -0.02 1.69 15 26 H 0.06 3.12 6.07 -2.38 -0.01 3.10 15 27 H 0.26 14.78 8.31 -92.71 -0.77 14.01 15 28 H 0.05 2.06 8.14 -2.39 -0.02 2.04 15 29 H 0.08 3.00 8.14 -2.39 -0.02 2.99 15 Total: -1.00 -63.57 234.95 5.97 -57.60 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: 1.10 Total: 4.63 kcal Atomic # 6 Polarization: -46.86 SS G_CDS: 1.89 Total: -44.98 kcal Atomic # 7 Polarization: -54.91 SS G_CDS: 0.24 Total: -54.66 kcal Atomic # 9 Polarization: -9.72 SS G_CDS: 0.71 Total: -9.01 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -63.57 5.97 -57.60 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213714113.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.248 kcal (2) G-P(sol) polarization free energy of solvation -63.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds